Gene Vapar_3471 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_3471 
Symbol 
ID7972582 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand+ 
Start bp3655426 
End bp3656130 
Gene Length705 bp 
Protein Length234 aa 
Translation table11 
GC content73% 
IMG OID644794055 
Producttranscriptional regulator, GntR family 
Protein accessionYP_002945354 
Protein GI239816444 
COG category[K] Transcription 
COG ID[COG1802] Transcriptional regulators 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.204704 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCCCGCCC AGCTCGTCAG CATCGAAGCC GCGCCCGACC TCGTCGACCA GGTCTACCGC 
GCCCTGCTCG GCGCCATCAG CAGCGGCGCG CTGGCGCCTG GCGAGCGGAT CACGCAGGAA 
GACATCGCGC AGCGCCTGTC GGTGTCACGC CAGCCCGTGC TGCAGGCGCT ACGCCTGCTC 
AAGAAGGACG GTTTCGTGCA CGATGCGCCC GGCCGCGGCG TGCTGGTGGC GCCGCTCGAT 
GCCGACTGGA TGCGCAAGGT CTACCAGGTG CGCGGCGCGC TCGACGTGCT GGCCGCGCGG 
CTCGCGGCCG CACAGCGCTT TCGCATCGAC CCCAGGCTGC TGGAGCGTGG CCGCCGTGCG 
GCGCGCGGGC GCAATGTCGA AGCCATGATC GATGCCGACC TGGCCTTCCA CCAGGCCATC 
TACGAGGCCT CGGGCAATCC GCTGATCGGC CAGAGCGCCG GTCAGCACTG GCGCCACCTG 
CGCCGCGCGA TGGGTGCGGT GCTGCAGGCC GAGCCGCAGC GCGAGACGCT CTGGGACGAG 
CACGAAGCCA TCGCCGCCGC CATTGCGGCC GGCCATGCGC AGCGCGCCGC GCAGCTGAGC 
GAGGAACACG TCGCCCGGGC CAGCGAGGCA CTGGGCCGGC GGCTCGCGCA GCAGCTCGCG 
CGCACCGCAT CCACCACCCC CACCCGCAAA GGAGACAAGG CATGA
 
Protein sequence
MPAQLVSIEA APDLVDQVYR ALLGAISSGA LAPGERITQE DIAQRLSVSR QPVLQALRLL 
KKDGFVHDAP GRGVLVAPLD ADWMRKVYQV RGALDVLAAR LAAAQRFRID PRLLERGRRA 
ARGRNVEAMI DADLAFHQAI YEASGNPLIG QSAGQHWRHL RRAMGAVLQA EPQRETLWDE 
HEAIAAAIAA GHAQRAAQLS EEHVARASEA LGRRLAQQLA RTASTTPTRK GDKA