Gene Vapar_3469 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_3469 
Symbol 
ID7972580 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand+ 
Start bp3653699 
End bp3654349 
Gene Length651 bp 
Protein Length216 aa 
Translation table11 
GC content71% 
IMG OID644794053 
ProductABC transporter related 
Protein accessionYP_002945352 
Protein GI239816442 
COG category[V] Defense mechanisms 
COG ID[COG1136] ABC-type antimicrobial peptide transport system, ATPase component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.297333 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACCCTGC GCATTTCCGG GCTCGCCAAG CACTACGGCG ACGTGCCCGT CTTCGAGAAC 
GTGACGCTCG GCGTCGAGCC CGGCGAGTTC GTTGCCATCG TGGGCGAATC GGGCGTCGGC 
AAGTCGACGC TGCTCAACTG CATGGCCGGG CTCGACAGCT GGGACGCGGG TACGGTCACG 
CACGGCGGCA TCGACATCGG CGCACTCGAC GGCGAAGCCT GCGCGCTCTG GCGCCGGCGC 
CACGTGGGCT TCGTGTTCCA GGCCTTCCAC GTGCTGCCGC ACCTGGACGT GGCGCAGAAC 
GTCTCGCTGC CGCTGATGCT GCTGGGCGGC AAGCGCGATG AAGGCCGCGT CGCGCACATG 
CTCGATGCGG TGGGCCTGCC CGGCATGGGC GCGCGGCTGC CGCAGACGCT CTCTGGCGGC 
CAGCTGCAGC GCGTGGCAAT CGCGCGCGCG CTGGTGCACC GGCCCGCCCT GCTGCTGGCC 
GACGAGCCCA CCGGCAACCT CGACCCGGGC ACCGCTTCGA AGGTGATGGA ACTGCTGATC 
GGCCAGACGC GCGAGCACGG CGCTTCGCTG GTGCTGGTGA CGCATTCCGA GAGCGCGGCA 
GCCCGTGCGG ACCGCCTGCT GCACCTCACG GCCGAGGGAA TACGCGCCTG A
 
Protein sequence
MTLRISGLAK HYGDVPVFEN VTLGVEPGEF VAIVGESGVG KSTLLNCMAG LDSWDAGTVT 
HGGIDIGALD GEACALWRRR HVGFVFQAFH VLPHLDVAQN VSLPLMLLGG KRDEGRVAHM 
LDAVGLPGMG ARLPQTLSGG QLQRVAIARA LVHRPALLLA DEPTGNLDPG TASKVMELLI 
GQTREHGASL VLVTHSESAA ARADRLLHLT AEGIRA