Gene Vapar_3426 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_3426 
Symbol 
ID7972537 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand
Start bp3614642 
End bp3615763 
Gene Length1122 bp 
Protein Length373 aa 
Translation table11 
GC content74% 
IMG OID644794010 
ProductKelch repeat-containing protein 
Protein accessionYP_002945309 
Protein GI239816399 
COG category[S] Function unknown 
COG ID[COG3055] Uncharacterized protein conserved in bacteria 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.261709 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCACCGCC GAAGCTTCGT TCTCGCGACC GCCGCCTGTG CGGTGGCCGG CGCCGCGCGC 
GCGCAGCACG CGGCCACGCA CGACACGCTG CCGCCGGCGC CTTCGTCGAA GGAGCCCTAT
GCGCGGCTGC AAGGCGGCGT TCCGCACCAC ATGACGCCCG AGCAGGAAGC CCAGCGCGTC
ACCGACAGCC CCGCACCGGC CGGTCCCGCG GGACGCTGGG AGCCGCGCGC GGCGCTGCCC
ATTCCGCGCA GCGAGATGGC CTGGGCCACT GCGGCGCAAG GGCGGATGCA CGTGGTCGGC
GGCTATGGCG AGGGCGCGGT CAACCGCGAC TACCACCACA TCTACGACCC CAAGGCCGAC
CGCTGGCTCG ACGGCGCACC GCTGCCGCGC GGCGCCAACC ACGTGGCGGT GGCGGCCGAC
GGCGACCGGA TCTACGCCCT GGGCGGCTTC GTCGAGCAGA ACCGCCGCTC CGACACCAAC
GCCTACGTCT ACGAGATCGC GGCGAACCGC TGGAGCGCCA TCGCACCGCT GCCACGACCG
CGCGGTGCCG CCGCCGCGGT GATGCAGGGC GGCGTGCTGC ACCTGATCGG CGGCGCCTCC
GAGCCTGCGG CCGAACGCGC GAGCGTGGGC TGGCACGAGG TCTACGACCC CAAGGCGGAC
CGCTGGTCCT CCGCCAAGCC GCTGCCCGGT GCGCGCGACC ACGTGGGCTG CGTGGCGCAC
GGCGGCCAGA TCCACGTGAT CGGCGGGCGC TTCAACACCT TCGAATACAA CACCGACCTG
CACCACGTCT ACCTGCCCGC GCGCGACACC TGGGAGCTGC GTGCGCCGCT GCCCACGGCG
CGCTCGGGCC ACGGCCTCGT GGTGTACCGC GGCCGCTTCT TCGCGATGGG CGGGGAGGGC
GGCTTCCTGG TGGGCGGCGT GCCGCGCCAG GCCAAGGTGT TCGGCCAGAT GGAAAGCTAC
GATCCCGTGG CCGACAGCTG GCAGCGCCAT GCCCCGATGC TCACGCCGCG CCATGCGGTG
GGCGCCGCGG TGATCGGCGA CTGGATCTAC GTGGCCGGCG GCGGCGCGGT GCTCGGCGGC
GCCGTGCAGT CCGCAGTGCA CGAGGCTTTC ACACTAGGCT GA
 
Protein sequence
MHRRSFVLAT AACAVAGAAR AQHAATHDTL PPAPSSKEPY ARLQGGVPHH MTPEQEAQRV 
TDSPAPAGPA GRWEPRAALP IPRSEMAWAT AAQGRMHVVG GYGEGAVNRD YHHIYDPKAD
RWLDGAPLPR GANHVAVAAD GDRIYALGGF VEQNRRSDTN AYVYEIAANR WSAIAPLPRP
RGAAAAVMQG GVLHLIGGAS EPAAERASVG WHEVYDPKAD RWSSAKPLPG ARDHVGCVAH
GGQIHVIGGR FNTFEYNTDL HHVYLPARDT WELRAPLPTA RSGHGLVVYR GRFFAMGGEG
GFLVGGVPRQ AKVFGQMESY DPVADSWQRH APMLTPRHAV GAAVIGDWIY VAGGGAVLGG
AVQSAVHEAF TLG