| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3411 |
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| Symbol | |
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| ID | 7972522 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 3599047 |
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| End bp | 3599883 |
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| Gene Length | 837 bp |
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| Protein Length | 278 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 644793995 |
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| Product | transcriptional regulator, RpiR family |
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| Protein accession | YP_002945294 |
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| Protein GI | 239816384 |
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| COG category | [K] Transcription |
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| COG ID | [COG1737] Transcriptional regulators |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCCGCCG ATTCCTTCGT CCGCCGCGTT CGCAGCCAGC TCGACCAGTT GCCCGCAACC
GAACGCCAGC TTGCCGATTT CGTCCTGGAG TTTCCCGGCG AACTGGCCAG CTATGCGGGC
AATGAACTCG CGGAACTCGC GGGCGTGTCG CCTTCCACGG TGAGCCGCTT CATCCGGCGC
ATCGGCTACG AGAACTATGA AGAGGCACGG CGCCACGTGC GGGAAGAAAA GCAGACCGGC
TCCCCGCTGT TCCAGAACGC CACCGAAGCC TCCAAGCGCG GCCATCTCGT GGCCACGCAC
TTCCAGCAGT CGCAGGCCAA CCTCGCGAAC ACCTTCGAGC GCCTGGACGA CCGGCAGATG
GCCGAGATCG TGAAGGCGAT CATCGGCGCG GGGCAGGTGC TGATCTTCGG CACGCGCAGC
AGCCATGCGT TCGCGCTGTA CCTGCGCTGG CAGATCATCC AGGTGGTGCC GCGCGTCACG
GCCATCCCGG GACCGGGCGA AACGCTGGCC GAGCACCTGG CGGGGCTGGG CGAGCGCGAC
TGCGTGATCG TGTTCGGCCT GCGCCGGCAG ACCCGCCAGC TCGACACCCT GCTGGCGGCC
GCGCACCGCG CCGGCGCGAA GATCGTCTAC ATCAGCGACC GCGCCTCGCC TGATTTCGCG
GATGCCACCT GGTCGCTGCA ATGCGACTGC CGCGGCCCGG GGCTGCTGGA CAACCACGCG
GCCGTGATGG GCGTGTGCGA CCTGATCGCC ACGATGGTGG TCGAGGCTGC CGGTTCGGCC
GGCCGCAAGC GGCTGGCGGC GATCGAGCTG GGGCACGAGG AAAACGGCGA GCTCTGA
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| Protein sequence | MSADSFVRRV RSQLDQLPAT ERQLADFVLE FPGELASYAG NELAELAGVS PSTVSRFIRR
IGYENYEEAR RHVREEKQTG SPLFQNATEA SKRGHLVATH FQQSQANLAN TFERLDDRQM
AEIVKAIIGA GQVLIFGTRS SHAFALYLRW QIIQVVPRVT AIPGPGETLA EHLAGLGERD
CVIVFGLRRQ TRQLDTLLAA AHRAGAKIVY ISDRASPDFA DATWSLQCDC RGPGLLDNHA
AVMGVCDLIA TMVVEAAGSA GRKRLAAIEL GHEENGEL
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