Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_3407 |
Symbol | |
ID | 7972518 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | + |
Start bp | 3595219 |
End bp | 3596199 |
Gene Length | 981 bp |
Protein Length | 326 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 644793991 |
Product | transglutaminase domain protein |
Protein accession | YP_002945290 |
Protein GI | 239816380 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG1305] Transglutaminase-like enzymes, putative cysteine proteases |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGCTCCTTC ACGTCACGCA CGAAACCCGC TACGAGTATT CGCCCGCGGT CGAAACGGCG CAGCACCTGG CCCACCTGAA GCCGCTGGCC ACCGCCTCGC AGCGGCTCGT GAGCCACAAG CTCGCGATCG AGCCGCCGCC CGCGCAGCGC AGCGAAGTGC CCGACGTCTA CGGCAACACG CGCGCCTTCT TCGCGCTCGA GGCCACGCAC GACAGCCTCG TCGTCACGGC CGAAAGCGTG GTCGAGACCG GGGCGCCGCA GCTCGCGCCC GGCATTGCGC GCGAGCTGCC CTGGGAGGCC GTGCGCGAGC GCTTCCGCTA CCGCAAGGAC GCCACCTTCG ACCCGGCCTC GGAGTTCGTG TTTCCGTCGC CCTACGTGCC GCGCCACGAC GACTTCGCGG CCTATGCGCG CGCGAGCTTC GCACCCGAGC GGCCCACCTT CGACGTGGCC ATGGACCTCA CCGAGCGCAT GTACCGCGAC TTCGCCTACG ACGCCGACAG CACCGAGATC AACACGCCCG CCGCCGAGGC GCTGGCGCAG CGCAAGGGCG TGTGCCAGGA CTTCGCCCAC ATCATGATCG CGTGCTTTCG CGTCATGGGC CTGCCGGCGC GCTACGTGAG CGGCTACCTG CTCACGCAGC CGCCGCCGGG CCAGCCGCGG CTGGTGGGCG CCGATGCCTC GCACGCCTGG GTGTCGGTCT ACCTGCCGGG CGAAGGCGAC GGTCCTGAAA GCACCGGCGG CTGGGCCGAT TTCGACCCCA CCAACGGGCG CCAACCCGGC GAAGACTATG TCGCGCTCGC CATCGGCCGC GACTACTCCG ACGTCTCGCC GATGCGCGGC GTGCTGCACG GCGGCGCGCG CCACACGCTC AAGGTGGGCG TGACGGTGCG TCCCATCGAG GAGCTGCGCG CGCAGGCCGA AGAGGCAGCG CAGTCACAAT CACAGACTCC ATCGCAACCC ACTGAAAAGG ATCTTCAATG A
|
Protein sequence | MLLHVTHETR YEYSPAVETA QHLAHLKPLA TASQRLVSHK LAIEPPPAQR SEVPDVYGNT RAFFALEATH DSLVVTAESV VETGAPQLAP GIARELPWEA VRERFRYRKD ATFDPASEFV FPSPYVPRHD DFAAYARASF APERPTFDVA MDLTERMYRD FAYDADSTEI NTPAAEALAQ RKGVCQDFAH IMIACFRVMG LPARYVSGYL LTQPPPGQPR LVGADASHAW VSVYLPGEGD GPESTGGWAD FDPTNGRQPG EDYVALAIGR DYSDVSPMRG VLHGGARHTL KVGVTVRPIE ELRAQAEEAA QSQSQTPSQP TEKDLQ
|
| |