| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3396 |
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| Symbol | |
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| ID | 7970634 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 3575755 |
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| End bp | 3576828 |
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| Gene Length | 1074 bp |
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| Protein Length | 357 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 644793980 |
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| Product | ABC transporter related |
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| Protein accession | YP_002945279 |
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| Protein GI | 239816369 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG3839] ABC-type sugar transport systems, ATPase components |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.452942 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCAATTGA CTCTGGAGCG CGTCACCAAG AAGGTCGGCG CGCAGACCTG GCTCTACGAA
CAGAGCATTG CGCCCCAAAG CGGCGCGGTC ACCGTGCTGC TGGGCGCCAC GCAGGCCGGC
AAGACCAGCC TGATGCGCCT GATGGCGGGG CTCGACACGC CCAGCACCGG CCGCGTGCTG
GTCGACGGCA AGGACGTGAC CGGCATGCCG GTGCGCGAGC GCAACGTGGC CATGGTGTAC
CAGCAGTTCA TCAACTATCC GTCGCTCACC GTGGCCGACA ACATCGCCTC GCCGCTCAAG
CTGCGCGGCG AGGCCAACAT CGAGGCGCGC GTGAAGGCGC TGGCCGACAA GCTGCACATC
GGCATGTTCC TCGACCGCCT GCCGGCCGAG CTGTCGGGCG GGCAGCAGCA GCGCGTGGCG
CTGGCGCGCG CGCTGGCCAA GAACGCGCCG CTGATGCTGC TCGATGAACC GCTGGTGAAC
CTCGACTACA AGCTGCGCGA AGGCCTGCGC GAAGAGCTCA CGCAGCTTTT TGCCACCGGC
GATTCGACGG TCATCTACGC CACCACCGAA CCCGGCGAGG CGCTGCTGCT GGGCGGCTAC
ACGGCCGTGA TGGACGAGGG CGAGTTGCTG CAATACGGCC CGACCGCCGA GGTGTTCCAC
GCGCCGCAAT CGCTGCGCGT GGCGCGCGCC TTCAGCGATC CGCCAATGAA TCTGCTGGCC
GGCACCGCAA CGCCCGGCCG CGTGCAACTC GCAGGCGGAC CGGTGCTGGC GCTGGCGGTG
CCTGAAAGCG TTTCGGGCGC GGTCACCGTC GGCCTGCGCG CGAGTGCATT GAACGTGGAC
GCGGGGGAGG GCGACATCGC CTTGCCCGGC AAGGTGGAGC TGGCCGAGAT CTCGGGATCC
GACACCTTCG TGCACGTCGA GACGGCGGTC GGCGAACTGG TGGCGCAGCT CACCGGCGTG
CACCGCTTCG AGCTGGGCAC GCCGATCACG CTGTACTTCA GTGCTTCGCA AGCCTATGTG
TTCGATGCCA GCGAAAAGCT GGCGCTCGCG CCGGCATGGC GCAAAGGAAG CTGA
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| Protein sequence | MQLTLERVTK KVGAQTWLYE QSIAPQSGAV TVLLGATQAG KTSLMRLMAG LDTPSTGRVL
VDGKDVTGMP VRERNVAMVY QQFINYPSLT VADNIASPLK LRGEANIEAR VKALADKLHI
GMFLDRLPAE LSGGQQQRVA LARALAKNAP LMLLDEPLVN LDYKLREGLR EELTQLFATG
DSTVIYATTE PGEALLLGGY TAVMDEGELL QYGPTAEVFH APQSLRVARA FSDPPMNLLA
GTATPGRVQL AGGPVLALAV PESVSGAVTV GLRASALNVD AGEGDIALPG KVELAEISGS
DTFVHVETAV GELVAQLTGV HRFELGTPIT LYFSASQAYV FDASEKLALA PAWRKGS
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