| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3379 |
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| Symbol | |
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| ID | 7970617 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 3558748 |
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| End bp | 3560769 |
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| Gene Length | 2022 bp |
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| Protein Length | 673 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 644793963 |
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| Product | transglutaminase domain protein |
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| Protein accession | YP_002945262 |
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| Protein GI | 239816352 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG1305] Transglutaminase-like enzymes, putative cysteine proteases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.207314 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAACAAGT TCATGCGCGA GATCTCGGCG CTGCCACGGG ACGCCCGGGA CACGCTGTTC
CTGCTTGCGG TGATTGCGCT CATCGTGCTG CCGCAGGCCG CGAACCTGCC CTGGTGGTGC
ACCGCCATCA CGGCGATGGT GCTGGTGTGG CGCAGCACGC TCGCCGTGGA GGCCCGTCCG
CTGCCGGGCA AGTGGGCGCG CGTGGGCCTG CTGGTGCTGG CGCTGGCCGC CACCTTCGCC
ACCCACCGCA CCCTGCTGGG GCGCGACGCC GGGGTCACGC TGATCGTGAT CCTGCTCGCG
CTCAAGACGC TGGAGCTGCG CGCGCGCCGC GACGCCTTCG TCATCTTCTT CCTGGGCTTC
TTCGCGATGC TCACGAACTT CTTCTACTCG CAGTCGCTGA TGACCGCGGT CGCCATGCTG
CTGGCGCTGC TGGGCCTGCT CACCGCGCTG GTCAATGCGC ACATGCCGGT GGGCAAGCCG
CCATTGATGC AGGCCGCGCG CACCGCCAGC TGGATGGCCC TGGCGGGCGC GCCGATCATG
CTCGCGCTGT TCCTGCTGTT TCCGCGCTTT GCGCCGCTGT GGGGCACGCC CGCCGATGCG
ATGGCCGGGC GCACGGGCCT GTCGAACACC ATGCGCGTGG GCACCATTGC CGAACTCGCG
CTCGACGACA GCATTGCGGC GCGCATCAAG TTCGACGACA ACCGCGCGCC GCCCCAGAGC
CAGCTGTATT TCCGCGGTCC GGTGCTCGCG CAGTTCGACG GGCGCGAGTG GAGCGCGCTG
CCGTCCTGGG CGCGCGGCGC GCCGCCATCG GGCAACCTGC GCACCAGCGG CCCGCCGGTG
CGCTACGAGG TCACGCTCGA GCCCAACCAC CGCCCCTGGC TGCTCACGCT CGATGCGGCG
CCCACCGCAC CGCAGGCGCC CGGCTATGAA GTCACGGGCA CGCCCGACCT GCAATGGGTG
GCGACCCGCC CCATCTCCGA TCTCGTGCGC TACCGCGCCG AGAGCTACAC GCAGTTCCAC
AGCGGCCCGC TGCGGCAGAC GGCCGCGCTG CGGGCCTACC TCGCGCTGCC GCCCGGATCG
AACCCGCGCA CCGCCGCGCT CGCCGCGGAA ATGCGCGCCC AGCCCGCGCT GGCCAGCGGC
GGCACCCAGG CCTTCATCCG CGCCGCACTG CAGCGGCTGC GCACCGGCGG CTACAGCTAC
ACGCTGGAGC CCGGCGTCTA CGGCAACGAC ACGGCCGACG AGTTCTGGTT CGACCGCAAG
GAAGGCTTCT GCGAGCACAT CGCCTCGGCC TTCGTGGTGC TGATGCGCGG CGCGGGCATT
CCAGCACGCA TCGTGACCGG CTACCAGGGC GGCGAACTCA ATGGCGTCGA CAACTACTGG
ATCCTGCGCC AGAGCGATGC GCACGCCTGG GCCGAGGTCT GGGAGGACGG CACCGGCTGG
GTTCGCGTCG ACCCCACGGG CGCGGTGTCG CCGGGCCGGG TCGGCCAGCT GCAGCGGCTG
GTGCCGCAGC CGGGCCTGTT CGCCGGCGCC ATCGGCGCGA TGAGCCCCAC GCTGGCGCAG
AACCTGCGCG CCGCCTGGGA AGCGGTGAAC AACGGCTGGA ACCAGTGGGT GCTCAACTAC
ACGCAAAGCC GCCAGCTCAA CCTGCTCAAG AGCATCGGCT TCAACGCGCC GAGCCTCGAG
GACCTGGCCT ACGTGCTGCT CTATCTGCTG GTGGGCGCAA GCCTTGCCGG CGCGGCATGG
ACCCTGTGGG AGCGCAGCCA GCACGACCCG TGGCTGCGCC TGCTCGGCCA GGCACGCGCG
CACCTCGCCA AGGCCGGGCT CCAGTTGCCC GACACCGCGC CGCCGCGCCA GATGGCCGCC
CAGGCCGAGG CGCGCTTCGG CCCGGCGGCA CAGGCCGTGC GCGAATGGCT GCTGAAGCTC
GAAGCCCAGC GCTACGCCCC GGCCTCGCCG GCTTCGCTCG CGGCGCTCCG GGCCGAGTTC
CGGCGCCTGG ACTGGCCGGC CGTGCCCACC GCGCGGCGCT GA
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| Protein sequence | MNKFMREISA LPRDARDTLF LLAVIALIVL PQAANLPWWC TAITAMVLVW RSTLAVEARP
LPGKWARVGL LVLALAATFA THRTLLGRDA GVTLIVILLA LKTLELRARR DAFVIFFLGF
FAMLTNFFYS QSLMTAVAML LALLGLLTAL VNAHMPVGKP PLMQAARTAS WMALAGAPIM
LALFLLFPRF APLWGTPADA MAGRTGLSNT MRVGTIAELA LDDSIAARIK FDDNRAPPQS
QLYFRGPVLA QFDGREWSAL PSWARGAPPS GNLRTSGPPV RYEVTLEPNH RPWLLTLDAA
PTAPQAPGYE VTGTPDLQWV ATRPISDLVR YRAESYTQFH SGPLRQTAAL RAYLALPPGS
NPRTAALAAE MRAQPALASG GTQAFIRAAL QRLRTGGYSY TLEPGVYGND TADEFWFDRK
EGFCEHIASA FVVLMRGAGI PARIVTGYQG GELNGVDNYW ILRQSDAHAW AEVWEDGTGW
VRVDPTGAVS PGRVGQLQRL VPQPGLFAGA IGAMSPTLAQ NLRAAWEAVN NGWNQWVLNY
TQSRQLNLLK SIGFNAPSLE DLAYVLLYLL VGASLAGAAW TLWERSQHDP WLRLLGQARA
HLAKAGLQLP DTAPPRQMAA QAEARFGPAA QAVREWLLKL EAQRYAPASP ASLAALRAEF
RRLDWPAVPT ARR
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