Gene Vapar_3355 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_3355 
Symbol 
ID7970593 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand- 
Start bp3534908 
End bp3535411 
Gene Length504 bp 
Protein Length167 aa 
Translation table11 
GC content63% 
IMG OID644793940 
Productpentapeptide repeat-containing protein 
Protein accessionYP_002945239 
Protein GI239816329 
COG category[S] Function unknown 
COG ID[COG1357] Uncharacterized low-complexity proteins 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGCGCCC AACAAATCAT CCTCGACCAC GACAAATGGC GCAAAGGCCT CGGCGGCGCG 
CCCGCGGGGC TGGCCGGCCA AAGCGATGCC AATGCCTATG CGGGGCTCGA CCTGGAGACG 
GCGCAATTCG CCTCGTCGTC CTTCGCGGGC AGCAGCTTCA CGGACACGGT CTTCCGGCAC 
GCCGGCTGGA TCGCCTGCCA GTTCGACGGC TGCAGCTTCA CGCGCTGCAA TTTCGAGCAC 
ATTGCCATGG TGGATTGCGT GTTCACGCGC TGCGCCTTCG ACCAGGCGCA ATTCAGCCAG 
AGCTCGCTTC GCGGCTGCCG CTTTGTCCAG TGCACATGGA ACGGCATGAA CTTCGACGGC 
AGCGACTGGC GGAACGTGCA GGTGCTGGAA TGCAAGGGAA CGGACGTGCA CGCCAGGAAC 
CTGCGCGGCG AGCAGGTCGA CTTCACGAAC AGCTATTTCG AGCAGCTCGA ATTCGAGGGC 
GCCTTGCTCA ACAACAGCCG GTGA
 
Protein sequence
MSAQQIILDH DKWRKGLGGA PAGLAGQSDA NAYAGLDLET AQFASSSFAG SSFTDTVFRH 
AGWIACQFDG CSFTRCNFEH IAMVDCVFTR CAFDQAQFSQ SSLRGCRFVQ CTWNGMNFDG 
SDWRNVQVLE CKGTDVHARN LRGEQVDFTN SYFEQLEFEG ALLNNSR