| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3329 |
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| Symbol | |
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| ID | 7970567 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 3508727 |
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| End bp | 3509650 |
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| Gene Length | 924 bp |
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| Protein Length | 307 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 644793914 |
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| Product | Shikimate dehydrogenase substrate binding domain protein |
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| Protein accession | YP_002945213 |
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| Protein GI | 239816303 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0169] Shikimate 5-dehydrogenase |
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| TIGRFAM ID | [TIGR00507] shikimate 5-dehydrogenase |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCACCT CCATCAGCGG CAGCACCCTG GCTTACCTGA TTCCCGGCGA CCCCGTGCGC
AACGTACGCC TGCCGCGGAT GTTCAACGCC GCCTTCGAGC GCTTCGGCAT CGACGCGGTG
CTGGTGCCCG TGCAGGTGCC GCTGCGCGAT TTCGCGGTGT TCTTCAAGTC GGCCTTCCTC
GCGCGCAACG TGCGCGGCAT GGTGATTGCG CCGCCGCACA AGCCGCTGGC GGTCGACCTG
CTCGACGGCT GCGGCCTGTT CGGCCGCGTG GCGGGCTCGG TCAACGTGGT GCGCCGCATC
GAGAACAGCG AGCTGGAGGG CGACCTGTTC GACGGCGAAG GCCTCTTGGG CGCGCTGGAC
CACTTCAACA TTCCGTTCCG CGGCAAGCGG GTGCTGATCC TGGGCGCCGG CGTGAGCGCC
GCGGCCATCG GCGTGGCGCT GGCCGAAGGC GGCACGGTCG ACGGCGCCGA GCACATCGCC
TTCTACGACA CCTCGGCCGG CAGGGCGGCC GGCGTGGCGG CCAAGCTCGA CGCCTTCTTC
GACGCCAACG TGGTGGCGGT CGACAGCAAT GCGCCCGAAG GCTACGACCT CGTCATCAAC
GCCACGCCGC TGGGCCTGGA CGAAGCCGAC GCGCTGCCCG TGGACGTCGC GCGCATGGAC
GGCCATGCCG CGCTGTTCGA CATCCTGCTG CGCAACCAGC CGACGCCGCT GGTGCGCGCG
GCGCGCGCGC GCGGCCTCAA TGCGCAGGCC GGCTTCGAGA TGCTGATCCA GCAGATGCCG
CACTACTTCG GGTACTTCGG CCACAAGGAT GCGGCCGAAG CGCTGCGCAA GGATGCGGAT
TTCCTGCGCG AGCTGATCTA TCCGCCGGCC ATGGCCGCAG AGATCAGGCA GCCCCTGCGC
TACCAATCCC CGAGCGTGGC CTGA
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| Protein sequence | MTTSISGSTL AYLIPGDPVR NVRLPRMFNA AFERFGIDAV LVPVQVPLRD FAVFFKSAFL
ARNVRGMVIA PPHKPLAVDL LDGCGLFGRV AGSVNVVRRI ENSELEGDLF DGEGLLGALD
HFNIPFRGKR VLILGAGVSA AAIGVALAEG GTVDGAEHIA FYDTSAGRAA GVAAKLDAFF
DANVVAVDSN APEGYDLVIN ATPLGLDEAD ALPVDVARMD GHAALFDILL RNQPTPLVRA
ARARGLNAQA GFEMLIQQMP HYFGYFGHKD AAEALRKDAD FLRELIYPPA MAAEIRQPLR
YQSPSVA
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