| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3307 |
|---|
| Symbol | |
|---|
| ID | 7973703 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | - |
|---|
| Start bp | 3485182 |
|---|
| End bp | 3486066 |
|---|
| Gene Length | 885 bp |
|---|
| Protein Length | 294 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 644793892 |
|---|
| Product | transcriptional regulator, LysR family |
|---|
| Protein accession | YP_002945191 |
|---|
| Protein GI | 239816281 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.273694 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCCACAC TGCCCGCCGT GACCAACCTG CAGGCCTTCG AAGCGGTGGC ACGAAGAAGA
AGCTTTGCCC TTGCGGCGTC GGAACTCCAC CTCACTGCTT CGGCGATCAG CCATCAGGTG
TCGCGCCTCG AAGCGCATCT CGGTGTGCGG CTGTTCGAGC GCAGCGCCCA TGGCGTGCGG
CTCAGCGCCG CGGGCGACAT GTACTTGTCG AAAGTTGGCG GCGCGTTGCT GGCCATCGCA
TCGGCAACCG ACGATCTGCG CCAAGGCGTG AGCAACAGCC TGTATGTGCA CTCGGCGCCC
AGCATTGCGA GCCTTTGGCT GATGTCGCGG CTGCGTGGCT TTGCGCAGGC TTACCCGGAC
ATTTCGCTGA ACCTGTCGGC CGCGCACACA ACCAGCGATT TCGCCCTGGG CCAGGCCGAC
ATCGACATCC GCTATGGAAT ACCGAACTGG CCCGACCTGG TGGTAGAACC CCTGTTCGAG
GAGCGCATCG TGCCGCTCGC GAGTCCTGCA TTCATCCGGC AGCACGGCTT GAAGCGCATC
GAACAGCTCG GCGGCGTGAA GCTGATCCAG AGCAACGTCA GCGTGGTGCA GTGGTCGGAC
TGGTTCGGAC AGTTCAGCGA CAAGCGGGCG CCCGACAGGT TTGCCATTCG TTTCGATCGG
GCGCAGATGT CGCTCGATGC AGCCACCCAA GGCCTGGGCG TTGCGCTTGA AAGTGCGACG
ATTGCCGCAA GGCACATTGC CGAGCGCAAG CTCAGGCCCG TGTTCGGCCT TGATCAGGCG
ATCAAGGTCA AGGCGCACTT TGCGGTGTAT CCACCACGGC ACGCCAAGCG GTCATCGGTC
GCGGCCTTCC TGCAATGGAT CCATGCCGAA GCGGCAAGAA ATTGA
|
|---|
| Protein sequence | MSTLPAVTNL QAFEAVARRR SFALAASELH LTASAISHQV SRLEAHLGVR LFERSAHGVR
LSAAGDMYLS KVGGALLAIA SATDDLRQGV SNSLYVHSAP SIASLWLMSR LRGFAQAYPD
ISLNLSAAHT TSDFALGQAD IDIRYGIPNW PDLVVEPLFE ERIVPLASPA FIRQHGLKRI
EQLGGVKLIQ SNVSVVQWSD WFGQFSDKRA PDRFAIRFDR AQMSLDAATQ GLGVALESAT
IAARHIAERK LRPVFGLDQA IKVKAHFAVY PPRHAKRSSV AAFLQWIHAE AARN
|
|---|
| |