Gene Vapar_3304 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_3304 
Symbol 
ID7973700 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand- 
Start bp3482638 
End bp3483315 
Gene Length678 bp 
Protein Length225 aa 
Translation table11 
GC content71% 
IMG OID644793889 
Productphospholipase/Carboxylesterase 
Protein accessionYP_002945188 
Protein GI239816278 
COG category[R] General function prediction only 
COG ID[COG0400] Predicted esterase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACGCAAC TCCACCTGCC TTTCAAGTTT CTCGAGCAGG CCGCAGGGCC GAACGTGCGC 
GAGCCCTGGC TGCTGGTGCT GATGCACGGC GTCGGCAGCA ACGAGCAGGA CCTGTTCGGC 
CTTGCGCGGC TCATGCCGCC GCAGTTTCAC GTGCTGAGCC TGCGCGCGCC GTATGTGCTG 
TCGCCCGATG CGTACGCGTG GTTCGAGTTC GAGGTGCTGC CTGATGGCGA GCGGCGCATC 
AACGAGGAGC AGGAGCGCGA AAGCCGCTTC CTGGTGGGCG AGATGGTGGC CTCGGCGTCG 
CAGCAGCTCG GCGTGCCGCC TGAGCGCGTG GTGGTCGGCG GCTTCAGCCA GGGCGGCATC 
ATGGCGCTGT CGCTGCTGCT GACACAGCCC GCGAAAGTTC GCGCCGCAAT GGTGTGGCAC 
GGCCGGCTGC TGCAACAGGC GGCGGCGCAC ATCGCGGCGC CCGAGGCTTT CGAGGGCAAG 
GCACTGTGGG TGAGCCACGG CAGCGCCGAC AACGTGATTC CGCCAAGCGC CGCAGAGGCG 
TCGCGCGAAC TCGCGCGCGG CCTGCCGCTG GCCCTGTCGG GGGCCGATTT TCCGGGCGGC 
CACGAGATCC GCCCGGCCGA GCTGCAGGGC GCACTGGCGT GGCTGCAGTC GCTCGGCTCG 
GCGGCGGGCG CCTCCTAG
 
Protein sequence
MTQLHLPFKF LEQAAGPNVR EPWLLVLMHG VGSNEQDLFG LARLMPPQFH VLSLRAPYVL 
SPDAYAWFEF EVLPDGERRI NEEQERESRF LVGEMVASAS QQLGVPPERV VVGGFSQGGI 
MALSLLLTQP AKVRAAMVWH GRLLQQAAAH IAAPEAFEGK ALWVSHGSAD NVIPPSAAEA 
SRELARGLPL ALSGADFPGG HEIRPAELQG ALAWLQSLGS AAGAS