| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3288 |
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| Symbol | |
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| ID | 7973684 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 3462019 |
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| End bp | 3462801 |
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| Gene Length | 783 bp |
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| Protein Length | 260 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 644793873 |
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| Product | short chain dehydrogenase |
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| Protein accession | YP_002945172 |
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| Protein GI | 239816262 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.0233742 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCTTACA GCATCGATCT TTCGGGCCGC GTGGCCTTCA TCACCGGCGC TTCCAGCGGG
CTGGGCGCGC AGTTTGCCAA GACGCTGGCG CGTGCCGGCG CCGCGGTGGT GCTCGCGAGC
CGCCGGCTCG AGAAACTGAA GGAGCTGCGC GCCCGCATCG AGGGCGAGGG CGGCGACGCG
CATGCGGTCG AGCTCGACGT CACCGACATC GGCAGCATCA AGGCCGCGGT GGCGCGCGCC
GAAACCGAGG TCGGCCCCAT CGACATCCTG GTCAACAACT CGGGCGTGAG CACCACCCAG
CGCCTTTCGG ACGTCACGCC GGACGACTAC GACTACATCT TCGACACCAA CGTGAAGGGC
TCCTTCTTCG TCGCACAGGA GGTGGGCAAG CGCATGCTGG CGCGCGCCGA CGGTTCGGCG
CCGGGCACCT ACATCGGCGG GCGCATCATC AACATCGCCT CGGTGGCGGC GCTCAAGGTG
CTGCCGCAGA TCGGCACCTA CTGCATGAGC AAGGCCGCGG TCGTGCAGAT GACCAAAGCC
ATGGCGCTCG AATGGGGCCG CTTCGGCATC AACGTGAACG CGCTGTGCCC GGGCTACATC
GCGACCGAGC TCAACGAGGA CCACTGGGCC TCCGAAGGCG GCGCCAAGCT CGTGAGCATG
CTGCCGCGCA AGCGCGTGGG CAAGCCCGAA GACCTGGACG GCCTGATCGT GCTGCTGGCC
AGCGGCCAGA GCCATTTCGT GAACGGCGCG GTCATTGCGG CCGACGACGG GTTCGCGCTC
TGA
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| Protein sequence | MAYSIDLSGR VAFITGASSG LGAQFAKTLA RAGAAVVLAS RRLEKLKELR ARIEGEGGDA
HAVELDVTDI GSIKAAVARA ETEVGPIDIL VNNSGVSTTQ RLSDVTPDDY DYIFDTNVKG
SFFVAQEVGK RMLARADGSA PGTYIGGRII NIASVAALKV LPQIGTYCMS KAAVVQMTKA
MALEWGRFGI NVNALCPGYI ATELNEDHWA SEGGAKLVSM LPRKRVGKPE DLDGLIVLLA
SGQSHFVNGA VIAADDGFAL
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