| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3257 |
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| Symbol | |
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| ID | 7973653 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 3431698 |
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| End bp | 3433221 |
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| Gene Length | 1524 bp |
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| Protein Length | 507 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 644793842 |
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| Product | methylmalonate-semialdehyde dehydrogenase |
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| Protein accession | YP_002945141 |
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| Protein GI | 239816231 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG1012] NAD-dependent aldehyde dehydrogenases |
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| TIGRFAM ID | [TIGR01722] methylmalonic acid semialdehyde dehydrogenase |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGACGCCA CCACCACCCC CAAGACCCAG GTCGCCACCG TCAAGCTCTT GATCGGCGGC
AAGTTCGTCG AATCCAAGAC CACCGAATGG CGCGACATCG TCAACCCGGC CACGCAGGAA
GTGCTGGCCC GCGTGCCCTT TGCCACGCAG GCCGAGCTCG ACGCCGCCGT GGCCTCCGCC
AAGGACGCCT TCAAGACCTG GCGCAAGACG CCCCTCGGCG CGCGTGCCCG CATCTTCCTG
AAGTACCAGC AGCTCATCCG CGAGAACATG GGCGAGCTGG CCGCCATCCT CACCGCCGAG
CAGGGCAAGA CGCTGCCCGA TGCCGAGGGC GACGTGTTCC GCGGCCTCGA AGTGGTCGAG
CACGCATCGA ACATCGGCAA CCTGCAACTC GGCGAACTGG CCAACAACGT GGCCAACGGC
GTCGACACCT ACACGCTGCT GCAGCCGCTG GGCGTGTGCG CCGGCATCAC GCCGTTCAAC
TTCCCGGCCA TGATCCCGCT GTGGATGTTC CCGATGGCCA TCGTCACCGG CAACACCTTC
GTGCTCAAGC CCTCGGAGCA AGACCCGATG GTCACGATGC GCCTGTGTGA GCTCGCGCTC
GAAGCCGGCA TTCCGCCCGG CGTGCTCAAC GTGGTGCATG GCGGCGAAGC GGTGGTCAAC
GGCATCTGCG ACCACAAGGA CATCAAGGCG ATCAGCTTCG TCGGCTCGAC CAAGGTCGGC
ACGCACGTTT ACAACCGCGC CACGCTGGCC GGCAAGCGCG TGCAATGCAT GATGGGCGCG
AAGAACCACG CCATCGTGAT GCCCGACGCC AACAAGGAGC AGACGCTCAA CGCGCTGGCG
GGCGCCAGCT TCGGCGCGGC CGGCCAGCGC TGTATGGCGG TGTCGGTCGC GGTGCTGGTG
GGCGAGGCGC GCAACTGGGT GCCCGAACTG ATCGCCAAGG CCAGGACGCT GAAGATCGGC
GCCGGCACCG AGAAGGGCGT GGACGTGGGG CCGCTGGTCT CTTGCGCCGC CTATGAGCGC
GTCAACGGCC TGATCGAGCG CGGCGTGGCC GACGGCGCCA AGCTCGAACT CGACGGCCGC
AAGCCCACGG TGCCAGGCTA CGAGAAGGGC AACTTCGTGG GCCCGACGAT CTTCTCGGGC
GTGAAGCCCG GCATGACGAT CTATGACCAG GAAGTGTTCG GCCCGGTGCT GTGCGTGGCC
GATGCCGAGA ACATCGACGA GGCCATCGAG CTGATCAACA GCAACCCGAA CGGCAACGGC
ACGGCGATCT TCACGCAGTC GGGCGCCGCG GCGCGCCGCT TCCAGGAAGA CATCGACGTG
GGCCAGGTCG GCATCAACGT GCCGATCCCG GTGCCGGTGC CGATGTTCTC GTTCACCGGT
TCGCGCGCAT CCAAGCTCGG CGACCTGGGG CCGTACGGCA AGCAGGTCAT CATGTTCTAC
ACGCAGACCA AGACCGTGAC GGCACGCTGG TTCGACGACA GCACCGTCTC GCACGGCGTC
AACACCACGA TCAGCCTCAA GTGA
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| Protein sequence | MDATTTPKTQ VATVKLLIGG KFVESKTTEW RDIVNPATQE VLARVPFATQ AELDAAVASA
KDAFKTWRKT PLGARARIFL KYQQLIRENM GELAAILTAE QGKTLPDAEG DVFRGLEVVE
HASNIGNLQL GELANNVANG VDTYTLLQPL GVCAGITPFN FPAMIPLWMF PMAIVTGNTF
VLKPSEQDPM VTMRLCELAL EAGIPPGVLN VVHGGEAVVN GICDHKDIKA ISFVGSTKVG
THVYNRATLA GKRVQCMMGA KNHAIVMPDA NKEQTLNALA GASFGAAGQR CMAVSVAVLV
GEARNWVPEL IAKARTLKIG AGTEKGVDVG PLVSCAAYER VNGLIERGVA DGAKLELDGR
KPTVPGYEKG NFVGPTIFSG VKPGMTIYDQ EVFGPVLCVA DAENIDEAIE LINSNPNGNG
TAIFTQSGAA ARRFQEDIDV GQVGINVPIP VPVPMFSFTG SRASKLGDLG PYGKQVIMFY
TQTKTVTARW FDDSTVSHGV NTTISLK
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