| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3240 |
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| Symbol | |
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| ID | 7973636 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 3415827 |
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| End bp | 3417917 |
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| Gene Length | 2091 bp |
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| Protein Length | 696 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 644793825 |
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| Product | protein of unknown function DUF802 |
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| Protein accession | YP_002945124 |
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| Protein GI | 239816214 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.701112 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAATAGAT TCCTCCACTA CGCTGTTTTT GCTGCGGGCC TGGCCGTCGT CTGCTGGGTC
GGCGCCGGAT ACGTCGGCTC GCACACGCTG GCGCTCGCCG TCACGATGCT GGTCGGCGCG
TTCTACCTGA TGGGGGCGCT GGAACTGCAC CGCTTCCAGC AGGCCACCGC CACCTTGTCG
CGTGCCGTGG CGGATCTTTC CGACCCGCCC GCGAGCCTGG GTGCGTGGCT CGACCGGCTG
CATCCCACGC TGCGCAACGC GGTGCGCCTT CGCATCGAGG GCGAGCGCGT CGGCCTGCCG
GGCCCGGCGC TCACGCCCTA CCTGGCCGGA CTGCTGGTGC TGCTGGGCAT GCTGGGCACC
TTCCTCGGCA TGGTGGTCAC GCTGAACGGC ACCGGCATGG CGCTGGAAAG CGCGACGGAC
CTGCCGGCCA TCCGCGCCTC GCTGTCGGCG CCCGTGAAGG GCCTGGGGCT GGCATTCGGC
ACCTCGGTGG CCGGCGTGGC CGCCTCCGCG ATGCTGGGGC TGGCCTCGGC GTTGTGCCGG
CGCGAGCGGC TGCAGGCCGG GCAGATGCTC GACAGCAAGA TTGCCACCAC GCTGCGCGCT
TATTCGCTGG CGCACCAGCG CGAGGCCTCG TTCCAGCTGC TCGAGCAGCA GGCCCACCAG
ATGCCGCGGC TGGTCGACCA GCTGCAGGCC ATGATGGCGG CAATGGAGCG GCAGAGCCAG
GCCCTGAACG AGCGCCTTGC CGCCGGCCAG GCGCAGTTCC ACACCCAGGC CGAGGCCGTG
TATGCCGGGC TGGCTTCCTC GGTCGACCAG TCGCTCAAGC AGAGCCTGAG CGAAAGCGCG
CGCATCGCCG GCGCGACGAT CCAGCCGGTG GTCGAGGCCA CCATGGCGGG CATCGCGCGC
GAGACGGCCT CGCTGCACGA CACCGTGGCG CGCACGGTGC AGCAGCAGCT CGACGGCCTC
TCGAGCCGCT TCGAGGCCAC CACCGCCAGC GTGGCGGGCA CCTGGCAGGC TGCGCTGGCC
GATCACCAGC GCACCTCCGC GGCGCTGTCG AGCGACCTGC GCGCCTCGCA TGACCGCTTT
GCCGAAACCT TCGAGCAGCG CTCGGCCTCG CTGGTGGAAG GCGTCTCGGC CCGGCTGGAA
AGCACCGCAG GTAGCGTGTC GGACACCTGG GGCAGCGCGC TCGCGCAGCA CCAGCGCGTC
AGCGAAAAGC TGTCGCAGGA GGCGCAGCAG TCGCTCGCGG CGGCGGCGGC CGGCTTCGAG
CAGCACTCGG CATCGCTGCT GCGCACCGTG GAGCAGGCGC ATGCCACGCT GCAGAGCGAC
ATCGCAGCGC GCGACGAGCA GCGCCTGTCG GCCTGGACAG AGGAGTTGGC CATGGTGTCC
GCATCGCTGC AGCAGGAGTG GCAGCAGGCG GGCGCGCACA CGGCAAGCCA GCAGCGGCAG
CTCTTCGATG CGCTCGCGCA GACCGCGCGC GACATGTCGA CCCAGGCCGA GGCGCATGCG
AAGAACACGG TCGGCGAGAT CGCGCGGCTG CTGCAGGCCG CGTCGGAAGC GCCGCGGGTT
GCAGCCGAAG TGGTGGCCGA GCTGCGCCAG AAGCTGTCGG ACAGCATGGC GCGCGACAAC
GCGATGCTGG AAGAACGCAG CCGCATCATG GAAACGCTGG GAACCCTGCT CGACGCCGTG
AACCACGCCT CCACCGAGCA GCGCTCGGCG GTCGATGCGC TGGTCGGTGC ATCGGCGGAT
GTGCTGGACC GCGTGGGCAG CCGCTTCACC GAGAAGGTCG ACGAGGAAAC CGGCAAGATG
GCCGCGGTCG CCGCGCAGAT CACCGGCAGC GCCGTCGAAG TGGCCAGCCT TGGCGAGGCC
TTCGGCTTTG CCGTGCAGCT GTTCAGCGAA TCGAACGACA AGCTGGTGGC CCACCTGCAG
CGCGTCGAGG GCGCGCTCGG TAAATCCATC GCGCGCAGCG ACGAGCAGCT GGCCTACTAC
GTGGCGCAGG CGAGGGAGGT CATCGACCTG AGCATCATGT CGCAGAAGCA GATCGTCGAA
GACCTGCGGC AGATCGCGAG CCGGCAGGCC GCCGTGGGCA GCGAGGCGTG A
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| Protein sequence | MNRFLHYAVF AAGLAVVCWV GAGYVGSHTL ALAVTMLVGA FYLMGALELH RFQQATATLS
RAVADLSDPP ASLGAWLDRL HPTLRNAVRL RIEGERVGLP GPALTPYLAG LLVLLGMLGT
FLGMVVTLNG TGMALESATD LPAIRASLSA PVKGLGLAFG TSVAGVAASA MLGLASALCR
RERLQAGQML DSKIATTLRA YSLAHQREAS FQLLEQQAHQ MPRLVDQLQA MMAAMERQSQ
ALNERLAAGQ AQFHTQAEAV YAGLASSVDQ SLKQSLSESA RIAGATIQPV VEATMAGIAR
ETASLHDTVA RTVQQQLDGL SSRFEATTAS VAGTWQAALA DHQRTSAALS SDLRASHDRF
AETFEQRSAS LVEGVSARLE STAGSVSDTW GSALAQHQRV SEKLSQEAQQ SLAAAAAGFE
QHSASLLRTV EQAHATLQSD IAARDEQRLS AWTEELAMVS ASLQQEWQQA GAHTASQQRQ
LFDALAQTAR DMSTQAEAHA KNTVGEIARL LQAASEAPRV AAEVVAELRQ KLSDSMARDN
AMLEERSRIM ETLGTLLDAV NHASTEQRSA VDALVGASAD VLDRVGSRFT EKVDEETGKM
AAVAAQITGS AVEVASLGEA FGFAVQLFSE SNDKLVAHLQ RVEGALGKSI ARSDEQLAYY
VAQAREVIDL SIMSQKQIVE DLRQIASRQA AVGSEA
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