Gene Vapar_3239 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_3239 
Symbol 
ID7973635 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand- 
Start bp3415171 
End bp3415827 
Gene Length657 bp 
Protein Length218 aa 
Translation table11 
GC content71% 
IMG OID644793824 
Producthypothetical protein 
Protein accessionYP_002945123 
Protein GI239816213 
COG category[N] Cell motility 
COG ID[COG1360] Flagellar motor protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.696628 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCGCGACG ATCTCGACGC CGGCCTGGAG CCGAGCGTGC CGGTGTGGGC GGTCTTCGGC 
GACCTGATGT CGGGGCTGGT CGGGGCCTTC GTGCTGATCC TCGTGGGCGC ACTCGGCATG 
CAGCTGGACC TGGCCGCCAA GCTGCAGGCC GAAGTGCAGC AGCGCCAGGC CGAGACGCAG 
CGCCGCGAGG CGCTCGAACA GGCGCTGGCC GGGCCGCTCG CGGCGGGCCG CGTCACGCTG 
AACAACGGTC GCATCGGCAT CAGCGGCAGC GTGCTGTTCG CCTTCAACTC GGCCGAGCTG 
CAGCCCGAAG GCCGACAGGT GCTCAAGAGC CTGGCTGCGC CCGTGGCCAG CTACCTGCGC 
GCGCGCGACG AGGTGCTGAT GGTGAGCGGC TTCACCGACG ACCGGCAGAT GCGTCAGTCG 
AAGGACGGCA ACCGTCCGTT CGCCGACAAC TGGGAGCTCT CGGCCCAGCG CGCGTTGACG 
GTGACGCGGG CCTTGATCGA GGAGGGCGTT CCATCGTCAT CGGTGTTTGC CGCGGCCTTC 
GGCTCCGAAC AGGCGGTGGC ATCCAATGCC GATGCCGAAG GGCGCGCGAA GAACCGGCGC 
GTCGAGATGG CGCCCACGCC GCGGCAGGCC GGCGCCGGCA CCAAGTCCCG TGAATAG
 
Protein sequence
MRDDLDAGLE PSVPVWAVFG DLMSGLVGAF VLILVGALGM QLDLAAKLQA EVQQRQAETQ 
RREALEQALA GPLAAGRVTL NNGRIGISGS VLFAFNSAEL QPEGRQVLKS LAAPVASYLR 
ARDEVLMVSG FTDDRQMRQS KDGNRPFADN WELSAQRALT VTRALIEEGV PSSSVFAAAF 
GSEQAVASNA DAEGRAKNRR VEMAPTPRQA GAGTKSRE