Gene Vapar_3228 details

Gene Information

• Locus tag: Vapar_3228
• ID: 7973461
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Variovorax paradoxus S110
• Kingdom: Bacteria
• Replicon accession: NC_012791
• Strand: +
• Start bp: 3407297
• End bp: 3407917
• Gene Length: 621 bp
• Protein Length: 206 aa
• Translation table: 11
• GC content: 71%
• IMG OID: 644793813
• Product: channel protein, hemolysin III family
• Protein accession: YP_002945112
• Protein GI: 239816202
• COG category: [R] General function prediction only
• COG ID: [COG1272] Predicted membrane protein, hemolysin III homolog
• TIGRFAM ID: [TIGR01065] channel protein, hemolysin III family

Plasmid Coverage information

• Num covering plasmid clones: 16
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTACCCCG GCGAACGGCT CAACGGATAC AGCCATCTGC TGGGCCTGGT GCTTGCACTC 
GCGGCCACCG CGCTGCTGCT GGCCAAGACC CTGCCCACCG GCGACGCCGC GCGGATTGCC 
GGCGCGCTGG TGTTCTCGCT CTCGGCCGTG CTGTTGTATG CGGCCTCCAC CCTGTTCCAC 
AGCACCCGGG GACCGCGCAA GCGCTTCTGG GAGCGCGTGG ACCACTGCGC CATCTACCTC 
TTGATCGCGG GCACCTACAC GCCGTTCGCG CTGGTCACGC TGCACGGGCT CTGGGGCTGG 
CTGCTGATGG CCGCCGTGTG GGGCGCTGCG CTTTTCGGCA TCGGACGCGA GCTGCTGCAG 
GCAGGCGGCG CGGACTCGAA GCCGCCGCTG GCGCTCTACA TCGCGATGGG CTGGCTCGGC 
GTGCTGGCCG CGGTGCCGCT GGCCGCGCGG CTCGACAGCG GCGGCCTTGC GTGGCTGCTG 
GCCGGCGGCG TGCTCTACAC CGTGGGCACG GTGTTCTATC GCAACCGGCG GGGCTTCCGG 
CATGCGCACG GCGCCTGGCA CCTGTTCGTG CTCGCGGGCA CTGCAAGCCA CTTCGTGTCG 
GTGGGCTGGT TCGTGCTGTG A 

 

Protein sequence

MYPGERLNGY SHLLGLVLAL AATALLLAKT LPTGDAARIA GALVFSLSAV LLYAASTLFH 
STRGPRKRFW ERVDHCAIYL LIAGTYTPFA LVTLHGLWGW LLMAAVWGAA LFGIGRELLQ 
AGGADSKPPL ALYIAMGWLG VLAAVPLAAR LDSGGLAWLL AGGVLYTVGT VFYRNRRGFR 
HAHGAWHLFV LAGTASHFVS VGWFVL