| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3219 |
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| Symbol | |
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| ID | 7973452 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 3398114 |
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| End bp | 3398944 |
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| Gene Length | 831 bp |
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| Protein Length | 276 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 644793804 |
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| Product | Extradiol ring-cleavage dioxygenase class III protein subunit B |
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| Protein accession | YP_002945103 |
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| Protein GI | 239816193 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3384] Uncharacterized conserved protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.128496 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGACCCACG ACAACACCCT CTCGCGCCTG CCCACGTATT TCATCTCGCA CGGCGGCGGT
CCCTGGCCCT GGATGAAGAA GGAAATGGGC GCCACCTACG ACCAGCTGGC CGCCGCGCTG
GCCGACATGC CGCGCCAGAT CGGCCGCACG CCGGACGCCA TCCTCATGGT GTCGGCCCAT
TGGGAGGCGC CGGTCTTCAC GGTGCAGGGC AACCCGCGGC CGCCGATGAT CTACGACTAC
GGCGGCTTTC CCGCCCACAC CTATGAAGTG CGCTACGACG CACCGGGCTC GCCCGAACTG
GCCCAGCGCG TGCAGTCGCT GCTCGAGGCG GCCGGGCTGC CCGCGGCCAT CGACCCGGAG
CGCGGCTTCG ACCACGGCAT GTTCTCGCCC ATGAAGGCGA TGTACCCCGA TGCCGGCGTG
CCGGTGGTGC AGCTGTCGCT CAAGCGCGGG CTCGATCCGG CGGAGCACCT GGCGCTCGGC
CGCGCGCTTG CGCCGCTGCG CGACGAGAAC GTGCTCATCG TGGGCAGCGG CCTGAGCTAT
CACAACCTGC GCAACTTCGG CCCGCAGGCG CATGGCGTGT CCCAGGCCTT CGGCGACTGG
CTCGACCACA CGGCCGTGCA GTCGCCGCCG CAGGAGCGCG TGCAGCGCCT CGCGGACTGG
GCTGCAGCCC CTTCGGCGCG CATGGCGCAC CCGCGCGAGG AGCACCTGAT CCCGCTGATG
GTGGCGGTCG GCGCGGCCGA GCAGGAGCCG GGCGAGCGCG TCTATCACGA AGACGCGTTC
ATGGGCGGGC TGGTGGTGTC GAGCTACCGC TTCGGCGCTG GCGCCAGCTG A
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| Protein sequence | MTHDNTLSRL PTYFISHGGG PWPWMKKEMG ATYDQLAAAL ADMPRQIGRT PDAILMVSAH
WEAPVFTVQG NPRPPMIYDY GGFPAHTYEV RYDAPGSPEL AQRVQSLLEA AGLPAAIDPE
RGFDHGMFSP MKAMYPDAGV PVVQLSLKRG LDPAEHLALG RALAPLRDEN VLIVGSGLSY
HNLRNFGPQA HGVSQAFGDW LDHTAVQSPP QERVQRLADW AAAPSARMAH PREEHLIPLM
VAVGAAEQEP GERVYHEDAF MGGLVVSSYR FGAGAS
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