| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3187 |
|---|
| Symbol | |
|---|
| ID | 7973420 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | + |
|---|
| Start bp | 3360147 |
|---|
| End bp | 3360965 |
|---|
| Gene Length | 819 bp |
|---|
| Protein Length | 272 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 644793772 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_002945071 |
|---|
| Protein GI | 239816161 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG2945] Predicted hydrolase of the alpha/beta superfamily |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.625607 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAACGCAC ACCCCTTCAT GTTCGGACCG GCGTCGCGCC AGATCTTCGG TGTGTTCCAT
GCCGCCGGCG ACGGACGGCA CGGCAGTACC GCGGTGCTCG TGTGCCCGCC CTTCGGCCAG
GAGGGCCTGC GGACCCACCG CTTCTTCAAG GTGCTGGCCG AGCGCCTCGC GCGCTCGGGC
ATTGCCACGC TGCGCTTCGA CTTCCACGGC GCGGGCGACT CGCCCGGCGA TGAAAGCGAA
GGCGAGCTCG ACGGCTGGCG CCGGGACCTG TGCTCGGCCC ACGAGGAGCT GCGCCGCAGG
GCCCCGGGAA GCCGCATCGT CTGGGTCGGC GCGCGGCTGG GCGCCACCCT GGCCGTGCTG
GCGGCGCGCA ACGGGCGCTG CGACCCGGCG CGGCTCGTGC TGTGGGAGCC GGTGATCGAC
GGCCGGCGCT ATGCGCGCCA CCTGCGCGAG CAGCATGTGG CGGCCATCGA CACGACCTTC
TGCATTCCGG ACCTGGTCTG GCGCCGCAAC CTTGCGCAGG ACCCCGACGC GCTGCCCGAA
GAAGCGTTGG GCACCGTGCT GTCGCCCGCG CTGCGCACGC AGCTCGGTGC GCTGGCGCCC
GAATCGCTGC CGCTCACGGC CCTGCACGAC ACGCTGGTGC TGACCTCGCC CGACGACCAG
CACACCGCGC AGTGGGCGGC CGAGCAGCAG TCGCGCCACA TGCCGGTGCG GCTCGCCTAC
TTCCAGCACC GGCTCGACTG GACCGCCGAT CCCTATCCCA ACAGCGCCAT GGTTCCGGCC
GACGCGCTCA ACCGCCTGCA GGGGGCCCTC CATGAATGA
|
|---|
| Protein sequence | MNAHPFMFGP ASRQIFGVFH AAGDGRHGST AVLVCPPFGQ EGLRTHRFFK VLAERLARSG
IATLRFDFHG AGDSPGDESE GELDGWRRDL CSAHEELRRR APGSRIVWVG ARLGATLAVL
AARNGRCDPA RLVLWEPVID GRRYARHLRE QHVAAIDTTF CIPDLVWRRN LAQDPDALPE
EALGTVLSPA LRTQLGALAP ESLPLTALHD TLVLTSPDDQ HTAQWAAEQQ SRHMPVRLAY
FQHRLDWTAD PYPNSAMVPA DALNRLQGAL HE
|
|---|
| |