| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3151 |
|---|
| Symbol | |
|---|
| ID | 7974361 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | - |
|---|
| Start bp | 3312702 |
|---|
| End bp | 3313613 |
|---|
| Gene Length | 912 bp |
|---|
| Protein Length | 303 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 644793735 |
|---|
| Product | protein of unknown function DUF6 transmembrane |
|---|
| Protein accession | YP_002945035 |
|---|
| Protein GI | 239816125 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.0367363 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACGGTCA ATGTGCGCCT TTCAGCCGGC CTGGCCGCCG GCGTGGCCTC GGCGCTGATC
GCGGGCATCT GGCAGGTGGC CACGCGCCAT TCGACCACCA CCACCATCGC TCCGGCCGAC
CTGGCGATCC TGCGCTACGG CATACCGGCG ATCGTGCTCA TGCCCGTGTG GCTGCGCGTC
GGCCTGCTGC CGCGCGGGGT GCCGCTGCGG TGGCTGACCG GGATGGTGCT TGGCGCGGGG
CTGCCTTTCG GGCTGGTGGC GATGAGCGGC ACCAGGTTCG CTCCTTCGGC GCACATGGGC
GTCTTCATGG CGGGCGCATG TCCGCTCTTT GCCGCGGGCC TGGCCTGGAT GTTCTGGCGC
GAACGCCCGG ACCGCGCGCG GGCGTTCGGC CTGGTGTTCC TTGCGGCGGG CATCGGCATG
CTGGGGGCGG GCAGTTTTCG CGGCGTCGAT GCCGGCGCCT GGCGCGGCGA TCTGCTCTTT
CTTCTTGCGG CCGCGTTGTG GGCCGGCTTC ACGCTGTCGT TCAGGCGCGC CGGCCTTGGC
GCATGGCAGG GCGCGGCGGT CGTCAGTGCG TGGTCGGCGA TCCTGCTCGT GCCGTGGCTG
CTGTGGCGGG GCGGAACGGG CCTTGCCGAT GCGCCGCTGC GCGACGTGCT GTGGCAGGCG
CTGATGCAGG GCGCGCTCGC GGGCTTGCTG GGGCTGTGGA TCTTCGGCGC GGCCGTTGCG
CGCCTTGGCG CGTCGCAGGC GGCGGCGTTC GGAGGGCTGG CGCCGGTCTT CTCCGCGTTG
GGCGGATGGT GGTGGCTGGC CGAGCCCGTC ATGGGCATCG ACCGGATCGC GATTGCCAGC
GCCGTGATCG GCGTGACGCT GGCCAGCGGT GCCCGCACGC GCAGTGCGCG CGTGGAATCA
ACCGCGGGGT AG
|
|---|
| Protein sequence | MTVNVRLSAG LAAGVASALI AGIWQVATRH STTTTIAPAD LAILRYGIPA IVLMPVWLRV
GLLPRGVPLR WLTGMVLGAG LPFGLVAMSG TRFAPSAHMG VFMAGACPLF AAGLAWMFWR
ERPDRARAFG LVFLAAGIGM LGAGSFRGVD AGAWRGDLLF LLAAALWAGF TLSFRRAGLG
AWQGAAVVSA WSAILLVPWL LWRGGTGLAD APLRDVLWQA LMQGALAGLL GLWIFGAAVA
RLGASQAAAF GGLAPVFSAL GGWWWLAEPV MGIDRIAIAS AVIGVTLASG ARTRSARVES
TAG
|
|---|
| |