| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3143 |
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| Symbol | |
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| ID | 7974353 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 3302460 |
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| End bp | 3303665 |
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| Gene Length | 1206 bp |
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| Protein Length | 401 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 644793728 |
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| Product | urea ABC transporter, permease protein UrtC |
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| Protein accession | YP_002945028 |
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| Protein GI | 239816118 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG4177] ABC-type branched-chain amino acid transport system, permease component |
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| TIGRFAM ID | [TIGR03408] urea ABC transporter, permease protein UrtC |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.8095 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATGAATT TCATCAAGGC CTCGATCCTG CGCTACCAGC TCGGCAGCCT CTTGCTGCTG
GTGCTGCTGC TGGCGGTCGT GCTGCCGCTG TCGCTCGACA TCTTCCGCCT GAACCTCGTG
GGCAAGTACC TCACCTACGC CTTCGTGGCC GTCGGCCTGG TGATGGTATG GGGCTACGGC
GGCGTGCTGA GCCTGGGGCA GGGCGTGTTC TTCGGCATCG GCGGCTATGC GATGGCGATG
TTCCTCAAGC TTGAGGCCTC CGACCCCGTC ACGACCAAGA TCCAGTCGAC GCCGGGCATT
CCGGACTTCA TGGACTGGAA CCAGATCACC GAGCTGCCCG CGCTGTGGCT GCCGTTCAAG
AGCCTGCCGC TGAGCCTGGC GCTGGTGGTG CTGGCGCCGA TGGCGCTGGC TTGGCTCGTG
AGCTTTGCGA TGTTCAAGCG CCGCGTGGGC GGCGTGTACT TTGCGATCAT CACGCAGGCG
GTGGCGCTGA TCTGCACCGT GCTCATCATC GGCCAGCAGG GCTACACCGG CGGCGTCAAC
GGCATGACCG ACCTGAAGAC GATGCTGGGC TGGGACACGC GCACCGACGG CGCCAAGTAC
GTTCTCTACT ACGTCTGCGT GGGCCTCCTG GTCGCGAGCA TCGTGCTGTG CCGCTGGATC
CAGACCAGCA AGCTCGGCAC GCTGCTGCTC GCCATGCGCG ACAAGGAAGA CCGCGTGCGC
TTCTCGGGCT ACGACGTGTC CAACTTCAAG GTCTTCATCT TCTGCCTGGC GGCCGGGCTC
TCGGGCATCG GCGGCGCGAT GTTCGCGCTG CAGGTGGGCT TCATGTCGCC GAGCTTCGTG
GGCATCGTGC CCTCGATCGA GATGGTGATC TTCTGCGCCG TGGGCGGCCG CATGAGCCTG
GTGGGCGCGG TGTACGGCGC GCTGCTGGTG AACGCAGGCA AGACGCTGTT CTCGGAGAGC
TTTCCGGACC TGTGGCTGTT CCTGATGGCC GGCCTCTTCA TCGGCGTGAC CATGGCCTTC
CCGATGGGGC TCGCGGGCCT GTGGGACGAG AAGTTGAGGC CCTGGTGGAA GGAGCGCCGC
AAGGCGCTGC GCGAGGCCGC GGTGCAGCCG CCGGCCTCCA CGCCGCCGCT GCCGCCCGCT
GCGCCGGCCG CGGCCGCGGC GCCCGAACCC CAGCTGCCCG ACGGTGTCGG CAGCCAGCGC
GCCTGA
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| Protein sequence | MMNFIKASIL RYQLGSLLLL VLLLAVVLPL SLDIFRLNLV GKYLTYAFVA VGLVMVWGYG
GVLSLGQGVF FGIGGYAMAM FLKLEASDPV TTKIQSTPGI PDFMDWNQIT ELPALWLPFK
SLPLSLALVV LAPMALAWLV SFAMFKRRVG GVYFAIITQA VALICTVLII GQQGYTGGVN
GMTDLKTMLG WDTRTDGAKY VLYYVCVGLL VASIVLCRWI QTSKLGTLLL AMRDKEDRVR
FSGYDVSNFK VFIFCLAAGL SGIGGAMFAL QVGFMSPSFV GIVPSIEMVI FCAVGGRMSL
VGAVYGALLV NAGKTLFSES FPDLWLFLMA GLFIGVTMAF PMGLAGLWDE KLRPWWKERR
KALREAAVQP PASTPPLPPA APAAAAAPEP QLPDGVGSQR A
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