Gene Vapar_3123 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_3123 
Symbol 
ID7974333 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand- 
Start bp3282834 
End bp3283535 
Gene Length702 bp 
Protein Length233 aa 
Translation table11 
GC content65% 
IMG OID644793708 
ProductPirin domain protein 
Protein accessionYP_002945008 
Protein GI239816098 
COG category[R] General function prediction only 
COG ID[COG1741] Pirin-related protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.235206 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTTGCAAG TCCGTAAATC ACAGGAACGC GGTTATGCCG ACCATGGCTG GCTGCGCTCG 
TTCCACAGCT TTTCCTTTGC CGGCTACTAC GACCCGGCCC ACATGGGTTT CGGCAACCTG 
CGGGTGATCA ACGAAGACCG CGTGGCCGCG GGCGCCGGTT TCGGCACCCA TGGCCACAAG 
GACATGGAGA TCATCAGCTA CGTGCTCTCG GGCGAACTGG CGCACAAGGA CAGCATGGGC 
AATGTGGAAT CCATCCCGCC GGGCGACGTG CAGCGCATGA GCGCGGGCCG CGGCGTGATG 
CACAGCGAGT TCAACCACAA GGCCGACGAG ACCACGCACT TCCTGCAGAT CTGGATCGAA 
CCGAACGTGC GCGGCATTGC GCCCGGCTAC GAGCAGAAGA AGTTCAGCGA CGCCGAAAAG 
CGCGGCAAGC TGCGCCTGGT GGCCTCGCCC GACGGTGCCG ACGGCTCGGT GACGGTGCAC 
GCCGATGCGC GCCTCTTCGC AGGCCTGCTC GACGGCGATG AAACCGCCAG CCTGGCGCTC 
GATTCGAAGC GCAAGAGCTA CGTGCACCTG GTGCGCGGCG AGCTCGAAGT CAATGGCCAG 
AAGCTCGCGG GCGGCGACGC CGCGATGCTC CAGGGCGAAT CGCAGCTCAC GCTCGGCGCC 
GGCAAGGATG CCGAAGTGCT GGTGTTCGAC CTGGCGGCGT GA
 
Protein sequence
MLQVRKSQER GYADHGWLRS FHSFSFAGYY DPAHMGFGNL RVINEDRVAA GAGFGTHGHK 
DMEIISYVLS GELAHKDSMG NVESIPPGDV QRMSAGRGVM HSEFNHKADE TTHFLQIWIE 
PNVRGIAPGY EQKKFSDAEK RGKLRLVASP DGADGSVTVH ADARLFAGLL DGDETASLAL 
DSKRKSYVHL VRGELEVNGQ KLAGGDAAML QGESQLTLGA GKDAEVLVFD LAA