| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3104 |
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| Symbol | |
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| ID | 7974314 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 3265832 |
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| End bp | 3266518 |
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| Gene Length | 687 bp |
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| Protein Length | 228 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 644793689 |
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| Product | hypothetical protein |
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| Protein accession | YP_002944989 |
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| Protein GI | 239816079 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4726] Tfp pilus assembly protein PilX |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAGCACT TTCAGGTCCC CGGCAGACGC TCGGCGCAGC AGCGCGGGTT CTCGCTGTTC
ATCGTGCTCA TCATGCTGCT GCTCTCGGCA CTGCTCGCGG TGGGCGGTGC GCGGACGGCC
CAGCTGCTCG AATCGATGGC GGGCAACCAG CGTGATTACC AGCGTGCCTT CGAGGCCGCC
GAAGCCGCGC TGCTGGATGC CGAGCGCGAC ATCCGGCAGC AGGCCTTCGA TGCCACGACC
CAGACCTACG TGGCGTGCTC CGCGCTCGTG AGCTCGCCTT GCCGCAAGGC CGCCGATGGC
CGCGTGTTTC CCGATCGGGA TACCGGCTGG GTGACCGCCT ACGTGGGGAA GGGCGCCAAC
AGCTGCGATC GTGGCATCTG CTACTTCGCC GGGACCGACT CCGTGGTCGC CGCTTCGGGC
AGCGAGGCCT ACCGGTTCTG GACCCGTTCC GCCTACGTGG ACCAGTACGC CGCCTACGGT
GCATTCACGG GCGCGCCGAC GGCCGGCAAT CCGGCCCTGG CCAGCGCCCG GTACTGGATC
GAAGTGATCG ACCGCGCGCG CAGCGACGAG CCGCTGTACC GGATCACCGC GCTGTCCACC
GGCGCGCGCA CCGCAAGCAC GGGCGGCGGT ACGCGGGTCC TGTTGCAGAT GTCCTTCGAT
CCGGCCGCGG TCAGGAAAGT GAATTGA
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| Protein sequence | MKHFQVPGRR SAQQRGFSLF IVLIMLLLSA LLAVGGARTA QLLESMAGNQ RDYQRAFEAA
EAALLDAERD IRQQAFDATT QTYVACSALV SSPCRKAADG RVFPDRDTGW VTAYVGKGAN
SCDRGICYFA GTDSVVAASG SEAYRFWTRS AYVDQYAAYG AFTGAPTAGN PALASARYWI
EVIDRARSDE PLYRITALST GARTASTGGG TRVLLQMSFD PAAVRKVN
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