| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3099 |
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| Symbol | |
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| ID | 7974309 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 3259221 |
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| End bp | 3260039 |
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| Gene Length | 819 bp |
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| Protein Length | 272 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 644793684 |
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| Product | Lytic transglycosylase catalytic |
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| Protein accession | YP_002944984 |
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| Protein GI | 239816074 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0741] Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.448974 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGTCCGATG TGGCAGACGG CTTTTTTGAG ATCACCCACA ACGGGTTTGC ACTGGTCGGC
CTGGCCATCG TGTTCGCGGC CCTCGCCCTG GTGGCGCGGC CCGACCTGCG CAAGACCGGC
GAGGAACAGC TCATGGGTTG GCTGCAGTCG CGCAAGCCCG CGCCCGAAGC CACCGACCTG
GAGCCGACCG CCATCGTGCG CACCACGGCC GCGAGCCCCG GCGACCTGCC CAAGCAGCAG
GCCGCCGTGG CCTATTGGCT CAGCAAGAAG TACCGCGTGG CGGCCGAGCC GCTGAGCGTG
CTGGTTGCGG AGGCCTATCA ATTGGGCAAG CGCACCAAGC TCGACCCGAC GCTGATCCTG
GCCATCATGG CCGTCGAATC GAGCTTCAAT CCCTTCGCCC AGAGCCAGGT CGGCGCCCAG
GGCCTGATGC AGGTCATGAC ACGCGTGCAC GGCGACAAGT ACGAAAGCGC GGGCGGCACG
CTCACCGCCT TCGACCCGGT GACCAACATG CGCGTGGGCG TGAAGGTGCT GCAGGAATGC
ATCGCCCGCG CCGGCTCGCT CGAAGGCGGC CTGCGCTACT ACGTGGGCGC GGCCAACCTC
GAGGACGACG GCGGCTATGC CGGCAAGGTG CTGGCCGAGC ACGAACGCCT GGTTCAGGTG
GCCAATGGCC GCAATCCGCC GACCATGTCA ACGCCCGCGG CGCCGGTCGT GCGTGCGCAG
GCCCAGCCGA TTCCGGTTGC CGTGCCGCCC AAGCCGCAAC AGGCGGCCGA GCCGGCAGCG
GACCCGCAGA AAGTGGCCCT GCTGTCGGGC GTTTCCTGA
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| Protein sequence | MSDVADGFFE ITHNGFALVG LAIVFAALAL VARPDLRKTG EEQLMGWLQS RKPAPEATDL
EPTAIVRTTA ASPGDLPKQQ AAVAYWLSKK YRVAAEPLSV LVAEAYQLGK RTKLDPTLIL
AIMAVESSFN PFAQSQVGAQ GLMQVMTRVH GDKYESAGGT LTAFDPVTNM RVGVKVLQEC
IARAGSLEGG LRYYVGAANL EDDGGYAGKV LAEHERLVQV ANGRNPPTMS TPAAPVVRAQ
AQPIPVAVPP KPQQAAEPAA DPQKVALLSG VS
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