Gene Vapar_3089 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_3089 
Symbol 
ID7974299 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand- 
Start bp3245977 
End bp3246630 
Gene Length654 bp 
Protein Length217 aa 
Translation table11 
GC content64% 
IMG OID644793674 
ProductHhH-GPD family protein 
Protein accessionYP_002944974 
Protein GI239816064 
COG category[L] Replication, recombination and repair 
COG ID[COG0122] 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.823092 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCCTGCTT CCTCGAAAAA CCCGGCGGTC CAGATCTTCA CGCCGGACTA TTGGGAAGAG 
GCCTGCAAGC ACCTGTCCAG GAAGGACCGC GTGATGAAGC GGCTGATCCC GAAGTTCGGC 
GATGCCTGCC TCGAGTCGCG CGGCGACGCA TTCACCACGC TCGCACGCAG CATCGTGGGC 
CAGCAGATTT CGGTGAAGGC CGCGCAGACC GTGTGGGACA AGTTCGTGGT GCTGCCGCGC 
AAGCTCACGC CGGCCAACGT GCTCAAGCTC AAGGTCGACG ACATGCGCGC GGCGGGGCTG 
TCGGCGCGCA AGATCGAGTA CCTGGTGGAC CTGGCCATTC ACTTCGATTC GGGCGCGGTG 
CACGTCGATG CCTGGAAGGA CATGGCCGAC GAACTCATCA TCGACGAGCT CGTGGCCATC 
CGCGGCATCG GCCGCTGGAC GGCCGAGATG TTCCTCATCT TCCACCTGAT GCGCCCCAAC 
GTGCTGCCGG TCGACGACCT GGGCCTGCTC AACGGCATCA GCGTCAACTA TTTTTCGGGC 
GATCCCGTGA GCCGCAGCGA TGCCCGCGAC GTTGCCGTGG CCTGGGCCCC GTATTGCAGC 
GTGGCGACTT GGTATATTTG GCGATCGCTC GACCCGGTAC CGGTCGCATA CTGA
 
Protein sequence
MPASSKNPAV QIFTPDYWEE ACKHLSRKDR VMKRLIPKFG DACLESRGDA FTTLARSIVG 
QQISVKAAQT VWDKFVVLPR KLTPANVLKL KVDDMRAAGL SARKIEYLVD LAIHFDSGAV 
HVDAWKDMAD ELIIDELVAI RGIGRWTAEM FLIFHLMRPN VLPVDDLGLL NGISVNYFSG 
DPVSRSDARD VAVAWAPYCS VATWYIWRSL DPVPVAY