Gene Vapar_2996 details

Gene Information

• Locus tag: Vapar_2996
• ID: 7973716
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Variovorax paradoxus S110
• Kingdom: Bacteria
• Replicon accession: NC_012791
• Strand: +
• Start bp: 3152443
• End bp: 3153114
• Gene Length: 672 bp
• Protein Length: 223 aa
• Translation table: 11
• GC content: 56%
• IMG OID: 644793581
• Product: N-acetylmuramoyl-L-alanine amidase
• Protein accession: YP_002944882
• Protein GI: 239815972

Plasmid Coverage information

• Num covering plasmid clones: 13
• Plasmid unclonability p-value: 0.815904
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCTTGTCG AAATTGACGA AAACGGAATG ATTAGTCACG CGCGAGTCAG AAATGCTCGC 
AGCCCCGTAA TCGAACGAGG CAGGCGAACC GGCGCAATCA CGGGCATCGT CGTGCATCAG 
ACCGATGCCG ATACCTCGGC GTCTTCATTG AACAGCTACA AGCGCCCGAA GGCGAATGGC 
GCGCACTTTC TCATCGATAC GGATGGAACC ATCTATCAGA CCGCTGCAAT CTATCAGCGC 
ACGAATCACG TCGGACCGCT GAAGGCGAGA TGCCTCGCCG TAGGGGCCGC AATGCCGTGC 
AACCTGCGCG ACTATGCGAA TGCAGGAGTG GAAGGAATGC ATCGCATTGA AATGCGCAAG 
CCGCCCAGTG ATCGTTATCC GAGCAACATG GAGGCCATCG GGATAGAGAT GGTTGGCAGG 
GCAGCGCTGC CGGTAGGCTT CAAGCCAATT GGTGAACCAG CAAAGTGGAC GCTCGAAAGA 
CAACGAGGTG AGTTCGGCAT ATTCGCTACC CCGACTGCGG CTCAAAATCT ATCTCTCTCC 
TGGCTTGTCA AGGCGCTTGA AGATTCCATG CAGATTCCTT CGAGTGAAAT CTTTCGTCAT 
CCCGTGGTCA GCAGAAAGAA TCCAACGGAA GCGCGAGGCG CAAACTGGAG TCTTCCCGTA 
CCAACGCCAT GA 

 

Protein sequence

MLVEIDENGM ISHARVRNAR SPVIERGRRT GAITGIVVHQ TDADTSASSL NSYKRPKANG 
AHFLIDTDGT IYQTAAIYQR TNHVGPLKAR CLAVGAAMPC NLRDYANAGV EGMHRIEMRK 
PPSDRYPSNM EAIGIEMVGR AALPVGFKPI GEPAKWTLER QRGEFGIFAT PTAAQNLSLS 
WLVKALEDSM QIPSSEIFRH PVVSRKNPTE ARGANWSLPV PTP