| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_2948 |
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| Symbol | |
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| ID | 7972224 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 3106383 |
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| End bp | 3106922 |
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| Gene Length | 540 bp |
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| Protein Length | 179 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 644793533 |
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| Product | peptide deformylase |
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| Protein accession | YP_002944834 |
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| Protein GI | 239815924 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0242] N-formylmethionyl-tRNA deformylase |
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| TIGRFAM ID | [TIGR00079] peptide deformylase |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.212222 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCCATCC GCGAAATCCT CAAGATGGGC GACCCCCGGC TGCTGCGCAT TGCACAGCCG
GTGGCTGCCT TCGACACCGA CGAACTGCAC CTGCTGGTGC GCGACATGTT CGAGACCATG
CTGGCCGTCA ATGGGGCGGG CCTGGCCGCG CCGCAGATCG GTGTCGACCA GCAACTCGTG
ATCTTCGGCA CCGACGTGGT CAATCCCCGC TATCCCGACG CGCCGCCGGT GCCGCGCACC
GTGCTGCTGA ACCCGGTCAT CACGCCGATC GGCGACGAGG AAGAAGAGGG CTGGGAAGGG
TGCCTCTCGG TGCCGGGCCT GCGCGGCGTG GTGCCGCGCT TTGCCAACAT CCGCTATACC
GGCTTCGACC CCTACGGCGA TCCGATCGAC CGCGTCGCGA GCGGCTTTCA TGCACGCGTG
GTGCAGCATG AAGTCGATCA CCTGCTGGGC AAGCTCTATC CGATGCGGGT GCGCGACTTC
TCGCGCTTCG GCTATACCGA CGTCCTGTTT CCAGGGCTGG ACGCGAACGA CGACGAGTGA
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| Protein sequence | MAIREILKMG DPRLLRIAQP VAAFDTDELH LLVRDMFETM LAVNGAGLAA PQIGVDQQLV
IFGTDVVNPR YPDAPPVPRT VLLNPVITPI GDEEEEGWEG CLSVPGLRGV VPRFANIRYT
GFDPYGDPID RVASGFHARV VQHEVDHLLG KLYPMRVRDF SRFGYTDVLF PGLDANDDE
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