| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_2944 |
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| Symbol | |
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| ID | 7972220 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 3102683 |
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| End bp | 3103741 |
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| Gene Length | 1059 bp |
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| Protein Length | 352 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 644793529 |
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| Product | polar amino acid ABC transporter, inner membrane subunit |
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| Protein accession | YP_002944830 |
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| Protein GI | 239815920 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0765] ABC-type amino acid transport system, permease component |
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| TIGRFAM ID | [TIGR01726] amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGGAACG TGGCCCAGGG CCCGATCGCC TGGCGCAGCG AACTCTGGGG TTCGCCGCCG
CGGGCGCTGG CGACCGTGCT GCTGCTCGCG CTGCTGGCAT GGGGCGGCTA CCACGCGGTC
GAATGGGGCG TGCTGCACGC CGTCTTCCGG CCTGACGCGG AAGCCTGCCG CGCGGTGCAG
CATGGCGCCT GCTGGGGCGT GGTGGCCGAG AAATGGCGCC CGATGCTGTT CGGCCGCTTT
CCCTACGAAG AGCAATGGCG CCCGGCCATT GCCGTGGCCG TGCTGTCGGC CGTCACTGTG
ATGAGCGCCT GGCCGCGCAG CTGGCGCTGG TGGCTGGCGC TGCTCTGGGT GGTGGCGCTC
GTGCTGTTCG TGCTGCTGAT GCGCGGCGGC GTGGCGGGCC TCGCCCCCGT GCCGACCAGC
CGCTGGGGCG GATTGCCGCT CACCATCGGC CTGGCGGTGG TGGGCCTCGC GCTGGCCTTT
CCGCTCGCGC TGCTGCTCGC GCTCGGGCGC CGCTCGGGTT GGCCGGTGGT CCGCACGCTC
AGTGCGAGCT ACATCGAGCT GGTGCGCGGC GTGCCGCTGA TCTCGGTGCT GTTCATGGCC
TCGTTCCTGC TGCCGCTGCT CTGGCCCGCG GGCTGGCAGC CCGATGTGCT GGTGCGCGTG
CTGGCGGGGC TCACGCTGTT CGTTGCGGCC TACCTGGCCG AGATCATCCG CGGCGGCTTG
CAGGCCGTGC CGCGCGGCCA GACCGAAGTG GCGATGGCGC TGGGCTTCGG CCGCTGGCCG
GTGCAGCGGG ACATCGTGCT GCCGCAGGCC CTGCGGCTGG TGGTGCCGGC GCTGACCAAC
AGCGTGGTCG GCACCTTGAA GGACACCTCG CTGGTCACGG TGGTCGGCCT GTTCGAGCTG
ACCGGCGCGC TGGGCCTCGC ACTCGGCGGC GACCCGACCT GGCGGCCGTT CTACCTCGAG
GGCTACCTCT TCGTTGCGGC GGTGTACTGG GTGCTGTGCT TCGGGCTATC GCGCTACAGC
GTGTGGCTCG AGCGGCGGCT GGGAGAGGGC GCGCGCTGA
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| Protein sequence | MRNVAQGPIA WRSELWGSPP RALATVLLLA LLAWGGYHAV EWGVLHAVFR PDAEACRAVQ
HGACWGVVAE KWRPMLFGRF PYEEQWRPAI AVAVLSAVTV MSAWPRSWRW WLALLWVVAL
VLFVLLMRGG VAGLAPVPTS RWGGLPLTIG LAVVGLALAF PLALLLALGR RSGWPVVRTL
SASYIELVRG VPLISVLFMA SFLLPLLWPA GWQPDVLVRV LAGLTLFVAA YLAEIIRGGL
QAVPRGQTEV AMALGFGRWP VQRDIVLPQA LRLVVPALTN SVVGTLKDTS LVTVVGLFEL
TGALGLALGG DPTWRPFYLE GYLFVAAVYW VLCFGLSRYS VWLERRLGEG AR
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