| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_2931 |
|---|
| Symbol | |
|---|
| ID | 7972207 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | - |
|---|
| Start bp | 3083216 |
|---|
| End bp | 3084445 |
|---|
| Gene Length | 1230 bp |
|---|
| Protein Length | 409 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 644793516 |
|---|
| Product | extracellular ligand-binding receptor |
|---|
| Protein accession | YP_002944817 |
|---|
| Protein GI | 239815907 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.014925 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCAATTTG CCATCAAGTC AGCAGCCGCC TGTGCCATGT TGGTCGGCAT GACGGCCGCA
CTCGCCCAGA AGGGCGAGAC CGTCAAGATC GCCTGGCTCG ATCCGCTGTC GGGCCTGATG
GCGGCGGTGG GAACCAACCA GCTCAAGACC ACGCAGTTCC TGGCCGAAGA GTTCAACAAG
AAGAACGCCT CGGGCGTGAA GTTCGAGATC ATCGCGATCG ACAACAAGCT CAGCCCGCAA
GAGACGACCG CGGCGCTGCG CTCGGCGCAG GACCAGGGTG CGCGCTACAT CACCCAGGGC
AACGGCTCGG GCCCGGCGCT TGCGATCATC GACGCCGTCG AAAAGAACAA CGCGCGCAAT
CCCGGCAAGG AACTGCTCTA CCTGAACTAC GCGGCGGTCG ACCCCGACCT CACCAACAGC
AAGTGCAGCT ACTGGCACTT CCGGCTCGAC GCCGATACCT CCATGAAGAT GGAGGCGCTG
ACCACCTGGA TGAAGGACCA GCCCGACATC AAGAAGGTCT ACATCCTTGG CCAGAACTAT
TCGCACGGCC AGCAGGTGTC GAAGTTCGCC AAGGAAGACC TGAAGGCCAA GCGCCCCGAC
ATCCAGATCG TGGGCGACGA CCTGCACCCG CTCGCGCAGG TGCGCGACTT CTCGCCCTAC
ATTGCCAAGA TCAAGGCCTC GGGCGCCGAC ACGGTCATCA CGGGCAACTG GGGCTCCGAC
CTGTCGCTGC TCATCAAGGC GGCGAACGAC TCGGGGCTGG ACGTCAAGTT CCTGACGTAC
TACGCGCCGG GCGCCGGCAC GCCCACGGCC ATGGGCGCCA CCTCGGCAGG CAAGGTCTAC
ACCGTGGCCT ATGCCCACTA CAACATGGGC GGCGAGATCC AGCGGCTTCT TGCCGGCTAC
AAGAAGAAGA TGAACGACGA CCTGACGCAG TCCTCGATCT ACCACACGTT CGCATTGCTC
GATGCCGCTT TCGTCCAGAC CAAATCGACC GACCCGGTCA AGGTGGCCGC GGCACTCGAA
GGCATGAAGA TCAAGAGCTT CAACGGCGAG GTCGAGATGC GCAAGGCCGA CCACCAGCTG
CAGCAGGGCC TGTACATCTC GCGCTGGGAA AAGGCGAGCG CCAAGTACCC CTACGACGCC
GAGAACACCG GCTACACGAA TGTCCCCGTG AAGTACTACG AGTCGTATGT GGCGAGCACG
CCCACCACCT GCCAGATGAA GCGCCCCTGA
|
|---|
| Protein sequence | MQFAIKSAAA CAMLVGMTAA LAQKGETVKI AWLDPLSGLM AAVGTNQLKT TQFLAEEFNK
KNASGVKFEI IAIDNKLSPQ ETTAALRSAQ DQGARYITQG NGSGPALAII DAVEKNNARN
PGKELLYLNY AAVDPDLTNS KCSYWHFRLD ADTSMKMEAL TTWMKDQPDI KKVYILGQNY
SHGQQVSKFA KEDLKAKRPD IQIVGDDLHP LAQVRDFSPY IAKIKASGAD TVITGNWGSD
LSLLIKAAND SGLDVKFLTY YAPGAGTPTA MGATSAGKVY TVAYAHYNMG GEIQRLLAGY
KKKMNDDLTQ SSIYHTFALL DAAFVQTKST DPVKVAAALE GMKIKSFNGE VEMRKADHQL
QQGLYISRWE KASAKYPYDA ENTGYTNVPV KYYESYVAST PTTCQMKRP
|
|---|
| |