| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_2929 |
|---|
| Symbol | |
|---|
| ID | 7972205 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | - |
|---|
| Start bp | 3080742 |
|---|
| End bp | 3081695 |
|---|
| Gene Length | 954 bp |
|---|
| Protein Length | 317 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 644793514 |
|---|
| Product | inner-membrane translocator |
|---|
| Protein accession | YP_002944815 |
|---|
| Protein GI | 239815905 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0559] Branched-chain amino acid ABC-type transport system, permease components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.0456892 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAACGTCG AATTCTTCGT CATCTCGCTG CTCAACGGCG TCAGCTACGG GCTGCTGCTG
TTCATGCTGA GCTCCGGCCT CACGCTGATC TTCAGCATGA TGGGCGTGCT CAACTTTGCG
CACGCCAGCT TCTACATGCT GGGCGCCTAC ATCGCCTACA CGCTCTCGGG CATCGTCGGC
TTCTGGCCGG CGCTGTTCAT CGCGCCGCTC TTGGTGGGCC TTTTGGGCGC GGCCTTCGAG
CGCTACAGCC TGCGCCGGGT CCACAAGTTC GGCCATGTGC CGGAACTGCT GGTGACCTTC
GGGCTTTCGT ACCTCATCCT GGAGCTGGTG CAGCTTGCCT GGGGGCGCTC GACCGTGCCC
TACGGCCTGC CGCCGCAGCT GCAGGGGCCG CTGTTCTCGC TGTACGGCAC GCAGTTTCCC
AAGTCGCGCT CGTTCATCAT GCTGGTGGCC GTCTTGATGC TCATCTCGGT GTGGCTGCTG
CTCACGCGCA CGCGCATCGG CCTGGTGATC CAGGCGGCGC TCAAGCACCC CGACATGGTC
GAGGCGCTGG GCCACAACGT GCCGCGCGTC TTCATGCTGG TGTTCGGCGG CGGCGCCGCG
CTCGCGGGCC TTGCGGGCGT GGTGGGCGGC AACACCTACG TCACCGAACC GGCGATGGCG
GCCTCCGTGG GCTCGATCAT CTTCGTGGTG GTGGTGGTCG GCGGCATGGG TTCGCTGGCC
GGCGCGTTCC TGGCGTCGCT TCTGATCGGC ATCATCCAGA CCTTCGCGGT GGCCATGGAC
CAGTCGTTTG CCGGCGGCCT GCAGATGCTG GGCTTCACGG TGACCGACCA GACCTTCGGC
TACGAGCTGC TCAAGCTCAC GATCTCGCAG GTCGCGCCGA TCCTGCCGTA CCTGTTCCTG
GTGCTGATTC TCATCTTCAG GCCCAAGGGT CTTCTTGGCA CCCGGGAGGA CTGA
|
|---|
| Protein sequence | MNVEFFVISL LNGVSYGLLL FMLSSGLTLI FSMMGVLNFA HASFYMLGAY IAYTLSGIVG
FWPALFIAPL LVGLLGAAFE RYSLRRVHKF GHVPELLVTF GLSYLILELV QLAWGRSTVP
YGLPPQLQGP LFSLYGTQFP KSRSFIMLVA VLMLISVWLL LTRTRIGLVI QAALKHPDMV
EALGHNVPRV FMLVFGGGAA LAGLAGVVGG NTYVTEPAMA ASVGSIIFVV VVVGGMGSLA
GAFLASLLIG IIQTFAVAMD QSFAGGLQML GFTVTDQTFG YELLKLTISQ VAPILPYLFL
VLILIFRPKG LLGTRED
|
|---|
| |