Gene Vapar_2895 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_2895 
Symbol 
ID7970784 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand- 
Start bp3041126 
End bp3041767 
Gene Length642 bp 
Protein Length213 aa 
Translation table11 
GC content69% 
IMG OID644793480 
ProductParaquat-inducible protein A 
Protein accessionYP_002944781 
Protein GI239815871 
COG category[S] Function unknown 
COG ID[COG2995] Uncharacterized paraquat-inducible protein A 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones9 
Plasmid unclonability p-value0.15337 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACGGAAG TACCTGGAAC CGTGGTTTGC CCGGGCTGCG ATGCGGTCTT CAGCCGCGCG 
CCGCTGAAGC CGCGCGAGGT GTCGCGCTGC GCCCGCTGCG GCACCGAGCT CTATCGCCAC 
GCGGGCGACC AGCAGCGCCG CATCCTGCCG CTGACGGTGG CCTCGCTGAT CATGTTCGCC 
ATTGCCAACC TGTTCCCGAT CGTCGAGATC GAGCTGCAGG GCCTGCGCAG CCAGACCACG 
CTGGCCGGCG CCGTGCTGGT GCTGAGCCGC GAAGGCATGT CGGTGGTGGC GCTCTTGGTG 
CTGGCGACGA CGCTGCTCTT TCCGCTGATG CAGCTGTGCA TCCTGGCCTA CCTGCTGGTG 
CCGCTCAGCC GCGAGCGCCG CCCGGCCGGC TTTGCGATCC TGGTGCGCGC GATGCAGATG 
CTGCGGCCCT GGGGAATGAT CGAGGTGTTC CTGCTCGGCG TGCTGGTGGC GATCGTCAAG 
CTCTCGAGCA TGGCGAGCGT GGTGGCGGGG CCGGCGCTGT GGGCCTTCAT GGCGCTCACG 
GTGCTGCTCA CCGCGGTGCT CTCGTTCAAC CCCAATGCCT TCTGGGAGAT GACCTTTCGC 
CCGCCCGGCG AATCCGGCGA GCCCGGCGGG GAGGCCGCGT GA
 
Protein sequence
MTEVPGTVVC PGCDAVFSRA PLKPREVSRC ARCGTELYRH AGDQQRRILP LTVASLIMFA 
IANLFPIVEI ELQGLRSQTT LAGAVLVLSR EGMSVVALLV LATTLLFPLM QLCILAYLLV 
PLSRERRPAG FAILVRAMQM LRPWGMIEVF LLGVLVAIVK LSSMASVVAG PALWAFMALT 
VLLTAVLSFN PNAFWEMTFR PPGESGEPGG EAA