Gene Vapar_2891 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_2891 
Symbol 
ID7970780 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand
Start bp3036362 
End bp3037981 
Gene Length1620 bp 
Protein Length539 aa 
Translation table11 
GC content71% 
IMG OID644793476 
Productdrug resistance transporter, EmrB/QacA subfamily 
Protein accessionYP_002944777 
Protein GI239815867 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG2814] Arabinose efflux permease 
TIGRFAM ID[TIGR00711] drug resistance transporter, EmrB/QacA subfamily 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCACAGA TCGGCAAGGC ACCCTGCGAC AACGCATTGA TCCTGCATGG CGCCAAGACG 
CAAGAGGGCG CCTGTCCCGA CGCGTCCAAG CCCTGGGTGC TGGCCGCGGC CATCGTGGGG
TCGAGCATGG CCTTCATCGA CGGCACGGTG GTCAACGTGG CGCTGCCGGC CATCCAGGCC
GATTTGCGGG CCACGGCGTT CCAGGCGCAG TGGGTGGTCG AGTCCTATGC CTTGCTGCTG
GCGGCGCTGC TGCTGGTGGG CGGCGCGCTC GGCGACCACT TCGGGCGGCG CCGCATCTTT
GCGATCGGCG TGGGCATCTT CGCCCTTGCT TCCGTGGCCT GCGGGCTCTC GGGCAGCGTG
CAGCAGCTGA TTGCCGCGCG CGCGGTGCAG GGCATCGGCG CGGCCTTGCT GGTGCCCGGC
AGCCTCGCGC TCATCAGCGC CGCATTTCCC GAGAAGGAGC GCGGCAAGGC CATCGGCGTC
TGGTCGGGCT TCAGCGGCAT CACGGCGGCC GCGGGGCCGG TGCTCGGCGG CTTCCTGGTC
GATCACTTCT CGTGGGCCTG GGCCTTCCTC ATCAACGTGC CGATGGCGCT GCTGGTGCTG
TGGATCGCAT GGCGCCACGT GCCGGAGAGC CGCGGCTCGT CGGCCAGCGG CGGGCTCGAT
CTCGTGGGTG CGCTGCTGGC CACGGCCGGC CTCGGCGGCA TCGTCTATGC GTTCATCGAG
GCACCCACGC AGCACTGGCG TTCGCCTGCG GTGCTGACGG CGCTGGGCAT CGGCATCGCC
GCCAGTGCGG GCTTCATTGC CGTGGAGCGC CGTGCGCGCA CGCCGATGCT GCCGCTCGCG
CTGCTGCGCA TCGGCAACTT CAGCGGCGCC AACCTGCTGA CCCTGCTGCT GTATGCGGCG
CTCGGCGGCG GGCTGTATTT CTTTCCGCTC AACCTGATCC AGGTGCAGGG CTACTCGGCC
ACGGTGGCCG GCGCGGCGCT GCTGCCGTTC ATCCTCATCA TGTTCGCGCT CTCGGGCTGG
GCCGGGCAGC TGGTCGACCG CTTCGGCCCG CGGCTGCCGC TGGTGATCGG CCCTGCAATT
GCCGCGGCGG GCTTCGCACT GTTCGCGGTG CCCGGCGTGG AAGCGAGCTA CTGGCGCGGC
TTCTTTCCCG CGGTGGTGGT GCTGGGCTTC GGCATGACCG TGACCGTGGC GCCGCTCACG
ACCACGGTGA TGAACGCCGT GGGGCCGGAG CAGGCCGGCG TGGCCTCGGG CGTCAACAAC
GCGGTGTCGC GCGCGGCCGC GGTGCTGGCC ATTGCGGTGT TCGGCGTGGT CATGGCCTGG
GCTTTCGACG GCGCGCTGGT TGACAACCTG CGCGGCATCG GCGCATCGCC CGAGGCGACG
GCATTTCTCC AGGGCGAGCG CAGCAAGCTG GCCGGCGCCG CGCTGCCGCC GGGCGTCGAT
GCGGCCACCG CCGCGGCCCT GAAAAATGCC GTGGCCGAAT CCTTCGTCGC GGGCTTTCGC
TGGGTGATGC TGCTGAGCGC GGGCCTGGCG GTGCTCAGCG CCTTGAGCGC CTGGCTGATG
ATCGGCGGCG GGGCGGCGCC GGCGGCAGAT GCTGCCCCTG AAACGCGCCG CATGGGTTGA
 
Protein sequence
MAQIGKAPCD NALILHGAKT QEGACPDASK PWVLAAAIVG SSMAFIDGTV VNVALPAIQA 
DLRATAFQAQ WVVESYALLL AALLLVGGAL GDHFGRRRIF AIGVGIFALA SVACGLSGSV
QQLIAARAVQ GIGAALLVPG SLALISAAFP EKERGKAIGV WSGFSGITAA AGPVLGGFLV
DHFSWAWAFL INVPMALLVL WIAWRHVPES RGSSASGGLD LVGALLATAG LGGIVYAFIE
APTQHWRSPA VLTALGIGIA ASAGFIAVER RARTPMLPLA LLRIGNFSGA NLLTLLLYAA
LGGGLYFFPL NLIQVQGYSA TVAGAALLPF ILIMFALSGW AGQLVDRFGP RLPLVIGPAI
AAAGFALFAV PGVEASYWRG FFPAVVVLGF GMTVTVAPLT TTVMNAVGPE QAGVASGVNN
AVSRAAAVLA IAVFGVVMAW AFDGALVDNL RGIGASPEAT AFLQGERSKL AGAALPPGVD
AATAAALKNA VAESFVAGFR WVMLLSAGLA VLSALSAWLM IGGGAAPAAD AAPETRRMG