| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_2891 |
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| Symbol | |
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| ID | 7970780 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 3036362 |
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| End bp | 3037981 |
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| Gene Length | 1620 bp |
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| Protein Length | 539 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 644793476 |
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| Product | drug resistance transporter, EmrB/QacA subfamily |
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| Protein accession | YP_002944777 |
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| Protein GI | 239815867 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG2814] Arabinose efflux permease |
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| TIGRFAM ID | [TIGR00711] drug resistance transporter, EmrB/QacA subfamily |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCACAGA TCGGCAAGGC ACCCTGCGAC AACGCATTGA TCCTGCATGG CGCCAAGACG
CAAGAGGGCG CCTGTCCCGA CGCGTCCAAG CCCTGGGTGC TGGCCGCGGC CATCGTGGGG
TCGAGCATGG CCTTCATCGA CGGCACGGTG GTCAACGTGG CGCTGCCGGC CATCCAGGCC
GATTTGCGGG CCACGGCGTT CCAGGCGCAG TGGGTGGTCG AGTCCTATGC CTTGCTGCTG
GCGGCGCTGC TGCTGGTGGG CGGCGCGCTC GGCGACCACT TCGGGCGGCG CCGCATCTTT
GCGATCGGCG TGGGCATCTT CGCCCTTGCT TCCGTGGCCT GCGGGCTCTC GGGCAGCGTG
CAGCAGCTGA TTGCCGCGCG CGCGGTGCAG GGCATCGGCG CGGCCTTGCT GGTGCCCGGC
AGCCTCGCGC TCATCAGCGC CGCATTTCCC GAGAAGGAGC GCGGCAAGGC CATCGGCGTC
TGGTCGGGCT TCAGCGGCAT CACGGCGGCC GCGGGGCCGG TGCTCGGCGG CTTCCTGGTC
GATCACTTCT CGTGGGCCTG GGCCTTCCTC ATCAACGTGC CGATGGCGCT GCTGGTGCTG
TGGATCGCAT GGCGCCACGT GCCGGAGAGC CGCGGCTCGT CGGCCAGCGG CGGGCTCGAT
CTCGTGGGTG CGCTGCTGGC CACGGCCGGC CTCGGCGGCA TCGTCTATGC GTTCATCGAG
GCACCCACGC AGCACTGGCG TTCGCCTGCG GTGCTGACGG CGCTGGGCAT CGGCATCGCC
GCCAGTGCGG GCTTCATTGC CGTGGAGCGC CGTGCGCGCA CGCCGATGCT GCCGCTCGCG
CTGCTGCGCA TCGGCAACTT CAGCGGCGCC AACCTGCTGA CCCTGCTGCT GTATGCGGCG
CTCGGCGGCG GGCTGTATTT CTTTCCGCTC AACCTGATCC AGGTGCAGGG CTACTCGGCC
ACGGTGGCCG GCGCGGCGCT GCTGCCGTTC ATCCTCATCA TGTTCGCGCT CTCGGGCTGG
GCCGGGCAGC TGGTCGACCG CTTCGGCCCG CGGCTGCCGC TGGTGATCGG CCCTGCAATT
GCCGCGGCGG GCTTCGCACT GTTCGCGGTG CCCGGCGTGG AAGCGAGCTA CTGGCGCGGC
TTCTTTCCCG CGGTGGTGGT GCTGGGCTTC GGCATGACCG TGACCGTGGC GCCGCTCACG
ACCACGGTGA TGAACGCCGT GGGGCCGGAG CAGGCCGGCG TGGCCTCGGG CGTCAACAAC
GCGGTGTCGC GCGCGGCCGC GGTGCTGGCC ATTGCGGTGT TCGGCGTGGT CATGGCCTGG
GCTTTCGACG GCGCGCTGGT TGACAACCTG CGCGGCATCG GCGCATCGCC CGAGGCGACG
GCATTTCTCC AGGGCGAGCG CAGCAAGCTG GCCGGCGCCG CGCTGCCGCC GGGCGTCGAT
GCGGCCACCG CCGCGGCCCT GAAAAATGCC GTGGCCGAAT CCTTCGTCGC GGGCTTTCGC
TGGGTGATGC TGCTGAGCGC GGGCCTGGCG GTGCTCAGCG CCTTGAGCGC CTGGCTGATG
ATCGGCGGCG GGGCGGCGCC GGCGGCAGAT GCTGCCCCTG AAACGCGCCG CATGGGTTGA
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| Protein sequence | MAQIGKAPCD NALILHGAKT QEGACPDASK PWVLAAAIVG SSMAFIDGTV VNVALPAIQA
DLRATAFQAQ WVVESYALLL AALLLVGGAL GDHFGRRRIF AIGVGIFALA SVACGLSGSV
QQLIAARAVQ GIGAALLVPG SLALISAAFP EKERGKAIGV WSGFSGITAA AGPVLGGFLV
DHFSWAWAFL INVPMALLVL WIAWRHVPES RGSSASGGLD LVGALLATAG LGGIVYAFIE
APTQHWRSPA VLTALGIGIA ASAGFIAVER RARTPMLPLA LLRIGNFSGA NLLTLLLYAA
LGGGLYFFPL NLIQVQGYSA TVAGAALLPF ILIMFALSGW AGQLVDRFGP RLPLVIGPAI
AAAGFALFAV PGVEASYWRG FFPAVVVLGF GMTVTVAPLT TTVMNAVGPE QAGVASGVNN
AVSRAAAVLA IAVFGVVMAW AFDGALVDNL RGIGASPEAT AFLQGERSKL AGAALPPGVD
AATAAALKNA VAESFVAGFR WVMLLSAGLA VLSALSAWLM IGGGAAPAAD AAPETRRMG
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