Gene Vapar_2858 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_2858 
Symbol 
ID7970747 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand- 
Start bp3003452 
End bp3004114 
Gene Length663 bp 
Protein Length220 aa 
Translation table11 
GC content70% 
IMG OID644793443 
Productthymidylate kinase 
Protein accessionYP_002944744 
Protein GI239815834 
COG category[F] Nucleotide transport and metabolism 
COG ID[COG0125] Thymidylate kinase 
TIGRFAM ID[TIGR00041] thymidylate kinase 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGTGAAG GCTTGTTTCT GACGCTCGAG GGCATCGATG GCGCCGGCAA GTCGAGCCAT 
CTCGACGCGA TGGAGGCGCT CTTCAAGGCC CGCGGCCGCA CGGTCGTGCG CACGCGCGAG 
CCCGGCGGCA CGCCGCTGGC CGAAACCCTG CGCGGGCTCG TCCTCGAACA GGCGATGGAC 
CCGTTGACCG AATCGCTGCT GGTGTTCGCG GCGCGGCGCG ACCACATCGT GCAGGTCATC 
GAGCCGGCGC TGGCGCGCGG CGACGTGGTG CTGTGCGACC GCTTCACCGA CGCCACCTTC 
GCCTACCAGG GCGCGGGCCG CGATTTCGAT ACGCAGCTGC TGTCGACGCT GGAGCAATGG 
GTGCAGGGGG GCAGGGGAGC GGCAGGGCAG CTTCTTCAGC CTCACATCAC GCTCTGGTTC 
GACCTGGCGC CCGAGATTGC CGCCGAGCGG CTCGCAGGCG CGCGCCTGCC CGACAAGTTC 
GAATCGCAGC CGGTCGAATT CTTCCGGCGC GTAGCGGCGG GCTATGCGGC CCGCGCGGCG 
GCCGATGCGC AGCGCTTCGT GCGCATCGAT GCAAGCCAGA CGCGCGACCA GGTCTGGCAA 
CAGGTCGAGA CCGCGCTCGT TGCGCGCGGC GCGCTGGCAC CTGCAACTGG AGCGCCGCGA 
TGA
 
Protein sequence
MSEGLFLTLE GIDGAGKSSH LDAMEALFKA RGRTVVRTRE PGGTPLAETL RGLVLEQAMD 
PLTESLLVFA ARRDHIVQVI EPALARGDVV LCDRFTDATF AYQGAGRDFD TQLLSTLEQW 
VQGGRGAAGQ LLQPHITLWF DLAPEIAAER LAGARLPDKF ESQPVEFFRR VAAGYAARAA 
ADAQRFVRID ASQTRDQVWQ QVETALVARG ALAPATGAPR