| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_2837 |
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| Symbol | |
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| ID | 7970726 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 2983178 |
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| End bp | 2984350 |
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| Gene Length | 1173 bp |
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| Protein Length | 390 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 644793422 |
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| Product | putative type 4 fimbrial biogenesis PilW-related protein transmembrane |
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| Protein accession | YP_002944723 |
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| Protein GI | 239815813 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4966] Tfp pilus assembly protein PilW |
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| TIGRFAM ID | [TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.0624121 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCCAAG CCAGCTTCGC GATCGCGGTT CAGCGCCCTG CCCGGCGGAC ACGCGCCTCG
CTGCGCCAGC ACGGCCTCAC GCTGATCGAG CTGATGGTGG CGATCACCAT CATGCTGATC
GTCGTGGCCG CGCTGCTGGC GCTGTTCCTC AACGTGAACA ACACCCAGCG CGAGATGGTC
AGGGTCAATC GCCAGATCGA GAGCGGCCGC CTCAGCATCT TCGTGCTGGA GAACGAGGTC
TCGCACGCGG GCTTCTGGGA AAACTACATG CCCGAGTTCG ACGACCTCAC CGTCAGTGGC
GTGCCCCAGA AGGTGCCCAC CGGCACGGCG CCCGATCCCT GCCTGGCCTA CTCGGCGGCC
AACTGGACCG ACGACTACAA GCGCAGCCTG CTCGATATGC CCGTGCAGGC CTACGCCGCG
GTGCCCGCCA GTTGCACCGA TCTGCTGCCG AATCAGAAAG CCGGCACCGA CGTGCTGGTG
GTGCGCCATG CCGAGACCTG CGTGCCAGGC GCGCCCAACT GCGAAGCCGA CACGCTGGGC
AAGCTCTACT TCCAGTCGTC GTTCTGCGGT ACGCAGAAGC CCTCGGACTT CGATCTCAGC
ACGGCGGGCT TTGCCACCAT GCTGGCCAAG AACTGCACGG CGCCGGCGCC CAAGCGCAAG
TTCATCTCCG ACATCTACTA CGTGCGCACC TACGCCGAGA CCGTGGGCGA TGGCATTCCG
ACCTTGGCCC GCTCGCGCTT CGACCTGTCG GCCACCGGCC TGGCGCAGCA GCCGCCGGTT
CCCCTCATCG AGGGCATCGA AGGCTTCCGC GTGGAGTTGG GCCTGGACAC CCTCAGTAAA
ACCGGCGCGC TCGTGAACTA CGCCCAAGCC ATCAACTGGG CCGACGTGGC CAACAGGTCC
ACGCCCACCA ATCGCGGCGA CGGAAGCCCC GATGGCGATT TCGTGCACTG CAGCACCGCG
CTGCCCTGCA CGGCCGACCA GCTGATGAAC GTGGCGGCGG TCAAGCTCTA TGTGGTCGCC
CGCAGCCTGG AGATTTCTCC CGGCCACACG GATACGCGCA CCTACAACAT GGGAAGCGGA
TCGCTCGGCC CCTTCAACGA CCACTACAAG CGGCATGCGT TCACCACCGC GATCCGCATG
ACCAACGTGA CCGGACGCAG GGAAACGCCG TGA
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| Protein sequence | MSQASFAIAV QRPARRTRAS LRQHGLTLIE LMVAITIMLI VVAALLALFL NVNNTQREMV
RVNRQIESGR LSIFVLENEV SHAGFWENYM PEFDDLTVSG VPQKVPTGTA PDPCLAYSAA
NWTDDYKRSL LDMPVQAYAA VPASCTDLLP NQKAGTDVLV VRHAETCVPG APNCEADTLG
KLYFQSSFCG TQKPSDFDLS TAGFATMLAK NCTAPAPKRK FISDIYYVRT YAETVGDGIP
TLARSRFDLS ATGLAQQPPV PLIEGIEGFR VELGLDTLSK TGALVNYAQA INWADVANRS
TPTNRGDGSP DGDFVHCSTA LPCTADQLMN VAAVKLYVVA RSLEISPGHT DTRTYNMGSG
SLGPFNDHYK RHAFTTAIRM TNVTGRRETP
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