| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_2806 |
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| Symbol | |
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| ID | 7971019 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 2951130 |
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| End bp | 2953487 |
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| Gene Length | 2358 bp |
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| Protein Length | 785 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 644793391 |
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| Product | DEAD_2 domain protein |
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| Protein accession | YP_002944692 |
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| Protein GI | 239815782 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG1199] Rad3-related DNA helicases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.717048 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGACCACGG ACCTTTCCAC CCCGCCGACC GAAGACGCGC CCGATGCCCG CGCTGTCTCC
GTCAAGGCCC TGTGCGCCTT CGGTGCCAAG GCCGGCGACC TCGACCTGCG CTTCGTGCCT
GCACCCAGCG CGCTCGAAGG CATGGCCGGC CATGCGCTGG TGCAGGGCCG GCGCGGCGAC
GGCTATGAAA GCGAGGTGCC GCTGGTCTCC CGCTGCGGCG CGCTCCAGGT GCGCGGCCGT
GCCGACGGGC ACGACCCGCG CGAACCCCGC GTCGAGGAGA TCAAGACCTT CCGCGGCGAC
TTCGACGCCA TCCGCGGCAA CCACCGGGCG CTGCACTGGG CCCAGGCCCG CTGCTACGGC
TGGATGCTTT GCGAAATGCA CGGCTACGAG CACATCACCG TGGCGCTGGT CTACCTGGAC
CTCGGCACCG GCGACGAAAC CGTGCTGGAA GAGCCCCACA CGCGGGCCGC GCTGCAGGCG
CATTTCGAAC TGCTGTGCGA GCGCTACAGC GCCTGGGCGC AGAGCGAGGC TGCGCACCAT
GCGGCGCTCG GCCATGCGCT CGGCCGGCTT GAATTTCCGC ACGGCTCGTT CCGGCCCGGC
CAGCGCGAAC TGGCCGAAGC CGTCTACCGC GCCGCCGTGA ACGCGCGCTG CCTGATGGCG
CAGGCACCCA CCGGCATCGG CAAGACGCTG GCCACCATCT TTCCGCTGCT GAAGGCGCGG
GCCGCGCGCA AGATCGACAA GATCTTCTTT CTCACCGCCA AGACCTCGGG CCGGGCCGTG
GCGCTGGAGG CCGTCGGCGT GCTGGGCAAG AACTGCGCGC AGCTGCGGGT GCTCGAACTC
ACCGCGCGCG AAAAGGTCTG CGAATACCCC GACCGCGCCT GCAACGGCGA TGCCTGCCCG
CTGGCCAAGG GCTTCTACGA CCGCCTGCCC GCCGCGCGCG AGGAAGCCGC GCAGGCCGCC
CGGCTCGACC GGCCGGCGCT GCGAAGAATT GCGTTGGCGC ACAGCGTGTG CCCCTATTTC
CTCGCGCAGG AAATGGCGCA CTGGTGCGAC CTGATCGTGG GCGACTACAA CTACTACTTC
GACGGCAGCG CCTTTCTCTA CGCCACCATG AAGGACGCCG AATGGCGCGC CGCGGTGCTG
GTGGACGAGG CGCACAACCT GCTGGAGCGC GCGCGCGGCA TGTACACGGC GCGGCTCGAC
GGCCTCGCGC TCGAAGAGGC CCACCGCGTG GCTCCCGCCT CGGTGCGCGG CGCGCTGGGC
CGGCTGTACC GCGAATGGGA CACGGTGCAG CAGGCGCAGG CCGAGCCCTA CGACACCGCC
GACGAGATTC CCGAGCGCTT CGCGCGCACG CTGCAGGCCG CCAACACGGC CATGGGCGAG
TACTTTGCGG CCACGCCCGA TGCGGCCCAG GGCCCGCTGC AGCGCTTCTT CTTCGATGCG
CTGCAGTTCG CCCGGCTGGC CGACGCCTTC GACGACCATT CGGTCTTCGA GCGCACGCTG
GGTCCCGCGC ACGCCCAGCA GCAGCGCAGC CTCGCGATCC GCAACCTGGT GCCGGCGCCG
TTCCTCGAGC CGCGCTTCGC GGACGCCGCA TCGGTCACCT GCTTCTCGGG CACCTTGTCG
CCGTTCGAGT TCTACCGCGA CGCGCTCGGC TTGCCGCCGG AAACGATGCT GCTCGACGTG
GCCTCGCCAT TCCGCAGCCA GCAGCTGCGC GTGGAGGTGG CCATGAACGT GTCGACCCGC
TTTCGCGACC GCGCGGGCTC GCTCGCTCGC GTGGCCGGGA TCATCGGCGA GCAGTTCGAG
CGCATGCCGG GCAACTACCT CGCGTTCTTC AGCAGCTTCG ACTACCTCGA AAAGGCCTGT
GCGGCCTTCC TGGCCAGGCA CCCCGGCGTG CCCGTGTGGG CCCAGACGCG CGGCATGGCC
GAGGCCGATC GCCACGGCTT TCTCGCGCGC TTCGAGGAAG GCGGCCAGGG CATCGGCTTT
GCCGTGCTCG GCGGTGCGTT CGGCGAAGGC ATCGACCTGC CCGGCAGCCG GCTGATCGGC
GCCTTCGTGG CGAGCCTGGG CCTGCCGCAG CACAACGCGC TCAACGAGAT CACGCGCGAG
CGCATGCAGG CGCGCTTCGG CAAGGGCTAC GAATACACCT ACCTCTATCC CGGCCTGCAA
AAGGTGGTGC AGGCGGCCGG CCGCGTCATC CGCACCGAGC AGGACAGCGG CGTGCTGCAC
CTGCTGGACG ACCGCTTTGC GCGCGCCGAG ATCCGGCAGC TGCTGCCGCC CTGGTGGGAG
CTGCGGCTGG GCGGGCCGGC ACACGCGGGC GAAGGAGAGA TCATCGATGC GCTCAGCCAG
GCACATCCAG TTCGCTGA
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| Protein sequence | MTTDLSTPPT EDAPDARAVS VKALCAFGAK AGDLDLRFVP APSALEGMAG HALVQGRRGD
GYESEVPLVS RCGALQVRGR ADGHDPREPR VEEIKTFRGD FDAIRGNHRA LHWAQARCYG
WMLCEMHGYE HITVALVYLD LGTGDETVLE EPHTRAALQA HFELLCERYS AWAQSEAAHH
AALGHALGRL EFPHGSFRPG QRELAEAVYR AAVNARCLMA QAPTGIGKTL ATIFPLLKAR
AARKIDKIFF LTAKTSGRAV ALEAVGVLGK NCAQLRVLEL TAREKVCEYP DRACNGDACP
LAKGFYDRLP AAREEAAQAA RLDRPALRRI ALAHSVCPYF LAQEMAHWCD LIVGDYNYYF
DGSAFLYATM KDAEWRAAVL VDEAHNLLER ARGMYTARLD GLALEEAHRV APASVRGALG
RLYREWDTVQ QAQAEPYDTA DEIPERFART LQAANTAMGE YFAATPDAAQ GPLQRFFFDA
LQFARLADAF DDHSVFERTL GPAHAQQQRS LAIRNLVPAP FLEPRFADAA SVTCFSGTLS
PFEFYRDALG LPPETMLLDV ASPFRSQQLR VEVAMNVSTR FRDRAGSLAR VAGIIGEQFE
RMPGNYLAFF SSFDYLEKAC AAFLARHPGV PVWAQTRGMA EADRHGFLAR FEEGGQGIGF
AVLGGAFGEG IDLPGSRLIG AFVASLGLPQ HNALNEITRE RMQARFGKGY EYTYLYPGLQ
KVVQAAGRVI RTEQDSGVLH LLDDRFARAE IRQLLPPWWE LRLGGPAHAG EGEIIDALSQ
AHPVR
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