Gene Vapar_2792 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_2792 
Symbol 
ID7971005 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand+ 
Start bp2938250 
End bp2938753 
Gene Length504 bp 
Protein Length167 aa 
Translation table11 
GC content72% 
IMG OID644793378 
Productprotein of unknown function DUF336 
Protein accessionYP_002944679 
Protein GI239815769 
COG category[R] General function prediction only 
COG ID[COG3193] Uncharacterized protein, possibly involved in utilization of glycolate and propanediol 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.157155 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCGTTCCA ACCTTCGCCT CGGCGCTCTC GCCATCCTGC TTGCCGCATC GGCCGCCCAG 
GCCCAGACGC CTGCACCCGC GGTGCGCACC GAGAAGAACA TCTCGCTCGC GCTGGCCAAC 
CAGATCGCGG CCGAAGCCGT GGCCGCCTGC GCCGCCAACG GCTACAACGT GGCCGCCACC 
GTGGTCGACC GCGCCGGCAC CGTGCGCGCC GTGCAGCGCG CCGACAACGC CGGCCCGCAC 
ACGCTGGCTT CGAGCGAGCG CAAGGCATGG ACCTCGGCAT CGGCCAAGAG CGCGACGCAG 
GCCATGATGG AAGGCGCGCA GAAGAACCCC GGCGCCGCCA ACCTGGTGTA CCTGCCGGGC 
TTCCTGCTGC TGGGCGGCGG CGTGCCGGTG AAGTCGGGCA ACGAAGTGAT CGGCGCCGTG 
GGCGTCGGCG GTGCGCCGGG CGGCCACCTG GACGACCAGT GCGCCAACGC GGCCATCGAG 
AAGGTCAAGG GCCAGCTGGG CTGA
 
Protein sequence
MRSNLRLGAL AILLAASAAQ AQTPAPAVRT EKNISLALAN QIAAEAVAAC AANGYNVAAT 
VVDRAGTVRA VQRADNAGPH TLASSERKAW TSASAKSATQ AMMEGAQKNP GAANLVYLPG 
FLLLGGGVPV KSGNEVIGAV GVGGAPGGHL DDQCANAAIE KVKGQLG