| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_2788 |
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| Symbol | |
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| ID | 7971001 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 2934346 |
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| End bp | 2934837 |
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| Gene Length | 492 bp |
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| Protein Length | 163 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 644793374 |
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| Product | Endoribonuclease L-PSP |
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| Protein accession | YP_002944675 |
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| Protein GI | 239815765 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0251] Putative translation initiation inhibitor, yjgF family |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.286317 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACTGCGC AGACCCGAGA CCAGATTGCC GACCGTATCG CCGCCGAGCT GGGCCACAGC
TTCGAGGGCG AGCTCGTCGC CGGCGGCAAC TACATCCCCG TCGTGCGCGA CGGCCGCACG
CTCTACACCA GCGGCCAGGT GCCGCGCGTG GGCACCACGG TGGTCGTCAC CGGCCGCGTG
GGCGACCAGG TGCCGCTCGG CAAGGCCCGC GAGGCCGCGC AGATCTGCGC CTTGCGCTGC
CTCGCGCTGC TGCGCCGCGA ACTGGGCTCG CTCGAGGGCA TCGAGAAGGT GCTGCGCGTT
GGCGTCTTCG TGCAGTGCAC GGCCGAATTC ACGCAGCAGA GCGAAGTGGC CGATGCGGCC
TCCGAGCTGC TGCACCGCGT GTTCGGCGAG GCCGGCGTAC ATGTGCGCAC GGCCGTCGGC
GTCTATGCGC TGCCGAAGAA TGCGAGCGTG GAGCTGGAGA TGACGGTGGC GGCCAAGGAC
AACGCAGGTT AG
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| Protein sequence | MTAQTRDQIA DRIAAELGHS FEGELVAGGN YIPVVRDGRT LYTSGQVPRV GTTVVVTGRV
GDQVPLGKAR EAAQICALRC LALLRRELGS LEGIEKVLRV GVFVQCTAEF TQQSEVADAA
SELLHRVFGE AGVHVRTAVG VYALPKNASV ELEMTVAAKD NAG
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