Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_2784 |
Symbol | |
ID | 7970997 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | + |
Start bp | 2930919 |
End bp | 2931824 |
Gene Length | 906 bp |
Protein Length | 301 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 644793371 |
Product | periplasmic solute binding protein |
Protein accession | YP_002944672 |
Protein GI | 239815762 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG0803] ABC-type metal ion transport system, periplasmic component/surface adhesin |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.199172 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAACTTTC CATCGAATCC CGCGCGCCGC CGCTTCTTCG CCGCGTCGCT CGTTGCGCTG CCGCTGCCAG TGCTTGCGCA ATCCACCGCA CCACGGCCGC TGCGCGTCGT CGCGAGCTTC TCGATCCTTG CCGACATGGC GCGCGAGATC GGCGGCAGCG CCGTCGAGGT TGCGGCCCTG GTCGGTCCGG ACTCCGACGC GCACGTCTTC CAGCCGAGCC CGGCCGATGC GCGGCGCCTT GCCAATGCAG AACTGGTCGT CGTCAACGGA CTGGCGTTCG AAGGCTGGAT GGACCGGCTG GTGCGCTCAT CCGGCTACCG CGGTCCCGTC GTGGTGGCCA GCGATGGCGT GCCGGTGCGC CGCATGGGCC GTGCGCCCGA TCCGCATGCA TGGCAGGACC TTGCGAACGC GCAGCGCTAT GCCGCGAACC TGCGCGATGC GATGGCGCGG GCACGGCCGG CATTCGCGGC CGAGATCGGC CGGCGCTGCG CGAGCTACAT CGAGCGGCTC CAGGCGCTCG ACCGCGAGAT TCGCGCACGT TTCGACGCGA TGCCGCGCGA GCATCGCCGC GTGATCAGTT CGCACGATGC GTTCGGCTAT TTCGGCGCGG CCTACGGCAT CGAGTTTCTT GCGCCGCAGG GCATGAACAC CGACAGCGAG GCCTCCGCCG CCTCGGTCGC GCGCCTGATC GGCCAGATCC GGCGCGAGGA TGTGCGCGCG GTGTTCGTCG AGAACATTTC CGATCCGCGC CTGGTACAGC GCATTGCACG CGAGGGCGGG GTCACCGTCG GCGGCCGGCT CTATTCCGAC GCGCTGTCGG CGCCGGGGAC CGAGGCGGAC ACCTACCTGA AGCTGTTCGC GCACAACGCC ACAACCATTG CCTCGGCGCT CTCGGCGAAG CGCTGA
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Protein sequence | MNFPSNPARR RFFAASLVAL PLPVLAQSTA PRPLRVVASF SILADMAREI GGSAVEVAAL VGPDSDAHVF QPSPADARRL ANAELVVVNG LAFEGWMDRL VRSSGYRGPV VVASDGVPVR RMGRAPDPHA WQDLANAQRY AANLRDAMAR ARPAFAAEIG RRCASYIERL QALDREIRAR FDAMPREHRR VISSHDAFGY FGAAYGIEFL APQGMNTDSE ASAASVARLI GQIRREDVRA VFVENISDPR LVQRIAREGG VTVGGRLYSD ALSAPGTEAD TYLKLFAHNA TTIASALSAK R
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