| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_2781 |
|---|
| Symbol | |
|---|
| ID | 7970994 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | + |
|---|
| Start bp | 2928019 |
|---|
| End bp | 2928924 |
|---|
| Gene Length | 906 bp |
|---|
| Protein Length | 301 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 644793368 |
|---|
| Product | Alpha/beta hydrolase fold-3 domain protein |
|---|
| Protein accession | YP_002944669 |
|---|
| Protein GI | 239815759 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG0657] Esterase/lipase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.286036 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCGCGCGA TCCCCCGGCC CGCCGGCATG GACGAACTGC TGCGCGAGGT CGGCCCGGTG
TGGCAGCAGG ACATCCGCGG CGCGGGCGAC CGGGTCAAGG CCGCCTACCT GCCTGTGCTG
ATGGCGGCGC CGCACGGCGG CGTCGACGTC ACGCGTGACC TTTCCTACGG ATCTCACGCG
CGCCAACGGC TGGACGTCTA TTGTCCGGCC GTTGCGCGCG ACGCGCCCGT GGTGGTCTTC
GTGCACGGCG GCGCTTTCGT GCGTGGCACC AAGGACATCA ACGATGCCAT GTACGCCAAC
GTGCTGACCT GGTTCGCTCG CCAGGGTTGC GTGGGTGTCA ACGTGGAGTA CCGGCTGGCA
CCGGAGGCGC CGCATCCGCA AGGCGCCCTG GACGTTGCCG CGGCCTGCGC CTGGGTGTCC
GCGCACATCG GCGGCTTCGG TGGCGATCCG CGCAGCATCT GCCTGATCGG CCACTCCGCC
GGCGGCACCC ATGCGGCGAC CTTCGCCTGC GATCCGGCGC TCGCCCATCT GCGGCGCGAC
GTGTGCTGTC TGGTACTCGT GTCCGCGCGG CTGCAGGCCG ACAGCCTGCC GGAGAACCCC
AACGCGGCCG GCGTGCGGGC GTATTTCGGC GAGGACGCAA GCCGCTATCC ATCCCTCTCG
CCCATGGCGC ATGCGGCGCA CCTCGCAATG CCCGTGTTCG TCGTCAATGC GCAATACGAG
AATCCGCTGC TCGACGTCTA TGCGACCGAG TTTGCCTATC GCGTGGCGGA GGCGCGCCGT
GTCGCGCCGC GCCACATGAC GGTCGCGGAC CACAACCACG TCTCCGTCAT GGCGCATTTC
AACAGCGGGG AGCAGCTGTT GGGCGAGCAG ATCCTCGACT TCTTCGCGGG CTCTTGTCGC
CGGTAG
|
|---|
| Protein sequence | MRAIPRPAGM DELLREVGPV WQQDIRGAGD RVKAAYLPVL MAAPHGGVDV TRDLSYGSHA
RQRLDVYCPA VARDAPVVVF VHGGAFVRGT KDINDAMYAN VLTWFARQGC VGVNVEYRLA
PEAPHPQGAL DVAAACAWVS AHIGGFGGDP RSICLIGHSA GGTHAATFAC DPALAHLRRD
VCCLVLVSAR LQADSLPENP NAAGVRAYFG EDASRYPSLS PMAHAAHLAM PVFVVNAQYE
NPLLDVYATE FAYRVAEARR VAPRHMTVAD HNHVSVMAHF NSGEQLLGEQ ILDFFAGSCR
R
|
|---|
| |