| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_2780 |
|---|
| Symbol | |
|---|
| ID | 7970993 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | + |
|---|
| Start bp | 2927623 |
|---|
| End bp | 2928012 |
|---|
| Gene Length | 390 bp |
|---|
| Protein Length | 129 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 644793367 |
|---|
| Product | Endoribonuclease L-PSP |
|---|
| Protein accession | YP_002944668 |
|---|
| Protein GI | 239815758 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0251] Putative translation initiation inhibitor, yjgF family |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.129718 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCATCAAC GCATCGTTCC CGACAATGTC GCAGCGCCCG CGGGTGCCTA CAGCCACGGC
ATCACCACCC ACGGCCCAGG AACCTGCCTG CACGTCGCGG GCCAGATCGG CGTGACCCCG
CAGGGCCGTC TGCTGGAGGG CTTCGAGGCC CAGGCAGACC AGGCCTGGAA GAACCTGGTG
GCGGTGCTGC AGGCGGCCGG CATGGACGCA TCGCACCTGG TCAAGGTGAC GACCTACCTC
ACCCGTGCCG CGGACCTGCC TCGGCTCAAT GCGATCCGCA GCGTGTACCT TGGATCGGCG
CGGCCGGCCT CGACCCTGAT GGTGGTCGCG GCGCTGGCGC ACCCGGACTG GTGTTTCGAG
GTCGAAGCCA CGGCCTTCCG GCAGGACTGA
|
|---|
| Protein sequence | MHQRIVPDNV AAPAGAYSHG ITTHGPGTCL HVAGQIGVTP QGRLLEGFEA QADQAWKNLV
AVLQAAGMDA SHLVKVTTYL TRAADLPRLN AIRSVYLGSA RPASTLMVVA ALAHPDWCFE
VEATAFRQD
|
|---|
| |