Gene Vapar_2770 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_2770 
Symbol 
ID7970983 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand- 
Start bp2916710 
End bp2917258 
Gene Length549 bp 
Protein Length182 aa 
Translation table11 
GC content65% 
IMG OID644793357 
Productauxin-binding protein-like protein 
Protein accessionYP_002944658 
Protein GI239815748 
COG category[R] General function prediction only 
COG ID[COG5553] Predicted metal-dependent enzyme of the double-stranded beta helix superfamily 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.306172 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGATTTCGC CCTTTCCCAT CAGCTCGACC CTTCAAACCG CGATCGACGA GATCGTCGAC 
GCCGCCGCAA AGGCCGATCG CTTCGATCGG GTCGCCGCGG TGCTGCGCGA CATCACCGCC 
CGCTTCCATT CGCTCGGCGA GCTGGTCCAC GAGGCAAGCG ACGATGAAGT CCTGCTGTGC 
GCGAACGACA CGCTGACGAT CTATCACATC ACCCTCACGC CGGGCCTGCA GTACCCGCCT 
CACAACCACT CGATGGATGC CCTCATCGGC ATCTACCGGG GCAGAGAGAC AAACTTGATC 
TACCCGCTGT CCGACGGTCG GCTGCAAGTT CCGGAGCGGC GCGAAGCCAT CGCACCCGAG 
GTGGTTCACC TGCCTCCCGA TACCGTGCAC GCGGTGGCGA ACCCGGGCAT GGCGCGTTCG 
GGCGCATTGC ATGTGTACCT CGGCAATCTG CTGCACACGA AGAGGCAGAT GTGGCGCTTC 
GCGGGGGATC GGCCCGGCGT GTTCGACAAC CAGCGGTATC TGGCCGAGGC GCGCGCCATC 
GCGCCCTGA
 
Protein sequence
MISPFPISST LQTAIDEIVD AAAKADRFDR VAAVLRDITA RFHSLGELVH EASDDEVLLC 
ANDTLTIYHI TLTPGLQYPP HNHSMDALIG IYRGRETNLI YPLSDGRLQV PERREAIAPE 
VVHLPPDTVH AVANPGMARS GALHVYLGNL LHTKRQMWRF AGDRPGVFDN QRYLAEARAI 
AP