| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_2766 |
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| Symbol | |
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| ID | 7970979 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 2913339 |
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| End bp | 2914073 |
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| Gene Length | 735 bp |
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| Protein Length | 244 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 644793353 |
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| Product | short-chain dehydrogenase/reductase SDR |
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| Protein accession | YP_002944654 |
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| Protein GI | 239815744 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.240645 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCAGAC TGAATGGAAA GACCGCCGTG ATCACCGGCG GCGCCACCGG CATCGGCCGC
GCCGCGGCAA AGCGCTTCAT CGAGGAGGGC GCCTTCGTCT TCATCTTCGG CCGCCGGCAG
GAAGCGCTCG ACGCCGCCGT GGCCGAACTC GGGCCCAATG CCCGCGCCGT GAAGGGCTCG
GTCTCCGACG AGGCCGACCT CGACCGGCTC TACGCGGCGG TGAAGGCCGA GCGCGGAACG
CTCGACGTCG TCTTTGCCAA TGCCGGGGCG GGAAGCCCGC TTGCGCTCGG CAAGATCACC
GCCGAGCACA TCGACGAAAC CTTCGACACC AATGTGAAGG GCACGATCTT CACGGTCCAG
AAGGCGCTGC CGCTGATGAG CAAGGGCGGC TCGATCATCC TGACCGGTTC GAGCGCCGGC
ACCACGGGTG CCCCGGCATT CGGTGCCTAC AGCGCGAGCA AGGCGGCCGT GCGCAACCTC
GCGCGGACTT GGGCGGAGGA CCTCAAGGGC ACCGGCATCC GGGTCAACGT GCTGTCACCC
GGGCCGACAG CGACCGACCT CGCGAGGGCA GTGCTGGGCG AGGAGGGCAT GAAGGCCTTC
GCATCGATGA ATCCGCTCCA GCGCATGGCC GATCCGGCGG AGATCGGCGC GGCGGCCGCC
TTTCTCGCGT CGCAGGACAG CAGCTTCATG ACCGCCAGCG AGGTCGCGGT CGACGGCGGC
CTGGCGCAGA TCTGA
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| Protein sequence | MTRLNGKTAV ITGGATGIGR AAAKRFIEEG AFVFIFGRRQ EALDAAVAEL GPNARAVKGS
VSDEADLDRL YAAVKAERGT LDVVFANAGA GSPLALGKIT AEHIDETFDT NVKGTIFTVQ
KALPLMSKGG SIILTGSSAG TTGAPAFGAY SASKAAVRNL ARTWAEDLKG TGIRVNVLSP
GPTATDLARA VLGEEGMKAF ASMNPLQRMA DPAEIGAAAA FLASQDSSFM TASEVAVDGG
LAQI
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