| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_2721 |
|---|
| Symbol | |
|---|
| ID | 7972321 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | - |
|---|
| Start bp | 2866526 |
|---|
| End bp | 2867164 |
|---|
| Gene Length | 639 bp |
|---|
| Protein Length | 212 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 644793307 |
|---|
| Product | Lysine exporter protein (LYSE/YGGA) |
|---|
| Protein accession | YP_002944609 |
|---|
| Protein GI | 239815699 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG1280] Putative threonine efflux protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.0286436 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACGCTCG CCACCGCCCT GCTGTTCACC CTGGTCGCCT TCACCGCCAT TGCCACGCCC
GGCCCCACGG TGCTGCTGGC GCTGAGCAAC GGCTCCCGCC ACGGCGTGCG CCGGGCGCTG
CCGGGCATGC TCGGCGCGGT GCTGTCGGAC TTCGTGCTGG TGGGCGCCGT CGCGCTTGGC
CTGGGTGCGC TGCTCGCGGC GTCGGAGTTC TGGTTCTCGA TGCTCAAGTG GGTGGGCGCC
GCCTACCTGG CCTGGCTCGG GCTGCGCATG CTGCGCTCCA AGGGCGGCTT CAAGCTGCCG
GATGCGGACG CCGCCGCCAC GGTGACGGCG GGCGAGAGCC GGCGCATCTT CTTCAAGTCC
TTCCTGGTGG CGGTGACCAA TCCCAAGGGC TACATCTTCT GCTCGGCGCT CCTGCCGCAG
TTCATCGATC CGGCGGCTGC GCAGGCGCCG CAGTACCTGA TCATTGCCTT GATCTTCGCG
GGCCTCGACA CGCTGGTGAT GCTGGCCTAC GCCTTCGTCG GCGCCCGCGC GATCCGGGTG
CTGACGGCAT CGGCCACGCG CTGGATCGAC CGCGCCTGCG GCGGCATGCT GCTGGCACTG
GCGGGCTCGC TCGCCTTCTA CCGGCGCAGC GCGGCCTGA
|
|---|
| Protein sequence | MTLATALLFT LVAFTAIATP GPTVLLALSN GSRHGVRRAL PGMLGAVLSD FVLVGAVALG
LGALLAASEF WFSMLKWVGA AYLAWLGLRM LRSKGGFKLP DADAAATVTA GESRRIFFKS
FLVAVTNPKG YIFCSALLPQ FIDPAAAQAP QYLIIALIFA GLDTLVMLAY AFVGARAIRV
LTASATRWID RACGGMLLAL AGSLAFYRRS AA
|
|---|
| |