| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_2709 |
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| Symbol | |
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| ID | 7972309 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 2851530 |
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| End bp | 2853032 |
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| Gene Length | 1503 bp |
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| Protein Length | 500 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 644793296 |
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| Product | TPR repeat-containing protein |
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| Protein accession | YP_002944598 |
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| Protein GI | 239815688 |
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| COG category | [K] Transcription |
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| COG ID | [COG4271] Predicted nucleotide-binding protein containing TIR -like domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.678086 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCGAAAC CACGTGTTTT TATCGGCTCC TCGGTTGAGG GTTTACCCGT TGCATATGCA
GTGCAGCAAA ACTTACTCCA CGACGCCGAG TCGACGGTTT GGGATCAGGG CGTTTTTGAT
CTCAGTAGTA CCACGATCGA ATCGTTGACC AAAATGCTGC ACGACAGCGA TTTCGCGATC
TTCGTTTTTT CTGCGGATGA CATGTTGAAA ATCCGAAAAA CTGAGTCGCT CAGTGTTCGC
GACAATGTCA TGTTTGAATT TGGTTTGTTC GTGGGACGAC TGGGCAGGGA GCGTGTTTTC
TTTCTACTGC CGCAGAACGA AGTTTTCCAT CTGCCCACCG ACTTGCTGGG CATTACCGGT
GGTAAATACG AGACAAATCG AAGCGACGGG AGTGTGCAAG CCGCCACTGG CCCAGCTACA
AACCAGATTC GCACGCAAAT GAAAGCTCTT GGAGTGGTGC CAGGGCGCAT TACAGGACAA
TCGAGTAGTG AAGGCGCTGT CGAGAAGAAT GAGCCGCGGT CCTGGATTCA GGACTACGTG
GAAGAAAATT ATTCCGCTGC GAAGGCGACC CTTCAAGCGG AGTTGAGTGG ACAAGTGGGC
GACCAATTAA CAGAGAATTT GGCTTGGGTA CTCCTGTGCG AAGTATCGGA AAAAGGAGAC
GGTAATACTC TAAAGTTAGA GGAGATGGCT CAAAAACACG AAGACAACGC ACCAATCGTT
CTTCATCTGG CGTCTCTGAT TCGCATGGCC GGCAATCCTA AACGAGCAGA AGTATTGCTC
ACCGCCGCCA AGTTGAAGTT TCCGACCGAT GCAACTGTAG CGAGAGCGCT TGCACGCTAC
CACAGCGAAG CATCCGACGA CACACGTGCA ATTGAAGAGC TACAACGCTT TGGGTTCGAA
GAATTTCCAG ATCTGGCATT GGATTTAGCT GACGCTTTGG AGCGAGAGGA GAAATTGGTC
GATGCGATTT GGGTAATCCG GCGTTGCTAT GCACGCCACC CATCGCACAA ACTCCTGCGG
TATAAGTATG CACGATTGGC ATTGCAACTC AATGATCGCG AAATTGCTCT TTCGCTTCTC
GCGACCTTAT GCGAGGAAAA TGGAAAGACC AGTGAGTACT GGGGGTACCT AGGTAACGCC
TGCTTCGGTT TGGAGCTTTT TGATTCGGCG CTGTCGGCGT ACAAACGCGC AATAAAGGAA
GGGGCTGGAG ACCAATCAGA CGCGTGGGTC ATCTCGAATA TCGCGAACCT CATGCTCCGG
TGCGACCTCC CTTCCGAAGC TCGTGAATAT CTTGCGAAAA GCTTGGGGCT CGATAAAAAT
TCTGACTACG CACACGCAAG AATGGCGGAA GCAATTAAAG CTGAATCGGC CGAGGTGAAA
AAGCTCGCAA AACTTCGAGC CGAGGGGCGG CGACAAATTC TCTCGGCGGA GAATTCGCTC
TCCAGCTTGA ACGGTTTGGC TAAGTTCGCA TTCATCGAGG AGTCGACCCC GCAGCAGGTA
TGA
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| Protein sequence | MAKPRVFIGS SVEGLPVAYA VQQNLLHDAE STVWDQGVFD LSSTTIESLT KMLHDSDFAI
FVFSADDMLK IRKTESLSVR DNVMFEFGLF VGRLGRERVF FLLPQNEVFH LPTDLLGITG
GKYETNRSDG SVQAATGPAT NQIRTQMKAL GVVPGRITGQ SSSEGAVEKN EPRSWIQDYV
EENYSAAKAT LQAELSGQVG DQLTENLAWV LLCEVSEKGD GNTLKLEEMA QKHEDNAPIV
LHLASLIRMA GNPKRAEVLL TAAKLKFPTD ATVARALARY HSEASDDTRA IEELQRFGFE
EFPDLALDLA DALEREEKLV DAIWVIRRCY ARHPSHKLLR YKYARLALQL NDREIALSLL
ATLCEENGKT SEYWGYLGNA CFGLELFDSA LSAYKRAIKE GAGDQSDAWV ISNIANLMLR
CDLPSEAREY LAKSLGLDKN SDYAHARMAE AIKAESAEVK KLAKLRAEGR RQILSAENSL
SSLNGLAKFA FIEESTPQQV
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