Gene Vapar_2670 details

Gene Information

• Locus tag: Vapar_2670
• ID: 7972432
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Variovorax paradoxus S110
• Kingdom: Bacteria
• Replicon accession: NC_012791
• Strand: +
• Start bp: 2813495
• End bp: 2814139
• Gene Length: 645 bp
• Protein Length: 214 aa
• Translation table: 11
• GC content: 67%
• IMG OID: 644793258
• Product: putative transmembrane protein
• Protein accession: YP_002944561
• Protein GI: 239815651
• COG category: [S] Function unknown
• COG ID: [COG4648] Predicted membrane protein

Plasmid Coverage information

• Num covering plasmid clones: 13
• Plasmid unclonability p-value: 0.735807
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTCTCGAT GGCGACTGGC GCTCCTGCTG CTGGTGGGGG TGGCCTATGC CGGCCTCTCT 
CACTGGATGA TGCTGTTCCA CCCCACCGAG CCGTGGGCCG TGGTGGTGCT GCTCGGTCCG 
CTCTGGCTGG CCGCCATGGG TTTTGCCGCA AGCAAGTTCG GCCGCTGGGG TTTTGCCGCG 
GCCATGCTGC TGGGCATCGG GGGCTTTGCG CTCGTGTTCC TGGGTGAGGC GGGCGACACC 
AACCGGCTCT ATGTGTTTCA GCATGTCGCC ATCAACGGCC TCCTGTGCGG CTGGTTCGGC 
GCCTCGCTGC GCGGGCCCGG CCTGCCGCTG ATCACCCAGT TCGCCCAGCG CGTGCATCCG 
CTCAAGGGCC AGATGCTGGC CTACACGACC ACGCTCACGC GCATCTGGAC CGCGTACTTC 
GCGCTGGTGG TGGTGTCGTC GATCGTGGTG TATTTGACGC TGCCTTTCTC GGCCTGGTCG 
CTGCTCGCGA ACGTGCTGAC GCCGCTGTCG GTCACGCTTC TTTTCGTGGG CGAGCACCTG 
GTGCGCTACC GGCTGCACCC CGAATTCGAG CGCACGCGGC TCATCGATGC AGTGCGCGCC 
TTCCAGGGCG CTTCGCCCGT CGACCACGGC AGCGGCAGCC GTTGA 

 

Protein sequence

MSRWRLALLL LVGVAYAGLS HWMMLFHPTE PWAVVVLLGP LWLAAMGFAA SKFGRWGFAA 
AMLLGIGGFA LVFLGEAGDT NRLYVFQHVA INGLLCGWFG ASLRGPGLPL ITQFAQRVHP 
LKGQMLAYTT TLTRIWTAYF ALVVVSSIVV YLTLPFSAWS LLANVLTPLS VTLLFVGEHL 
VRYRLHPEFE RTRLIDAVRA FQGASPVDHG SGSR