| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_2660 |
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| Symbol | |
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| ID | 7972422 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 2804618 |
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| End bp | 2805622 |
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| Gene Length | 1005 bp |
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| Protein Length | 334 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 644793248 |
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| Product | basic membrane lipoprotein |
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| Protein accession | YP_002944551 |
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| Protein GI | 239815641 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG1744] Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.00857799 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGACAGCAC GCCGTCAGTT GATCATTCGT TCCGCCGCCA TGGCCGCAGC AGCGCTTGCG
GCCGGCACGC CCGGCTTCGC GCTCGCGCAG GCCAAGCTCA AGGTGGCGGC GGTGTACACC
GTGCCCTTCG AGCAGCAATG GGTCGGCCGT ATCCACAAGG CGCTCAAGGC GGCCGAGGCG
CGCGGCGAGA TCGAATACAA GGCCACCGAG AACGTCAGCA ACGCCGACTA CGAGCGTGTG
ATGCGCGAGT ACGCCACCGG CGGCAACCAG CTGATCCTCG GCGAGGTCTT CGGCGTGGAA
GCGGCGGCGC GCAAGGTCGC GAAGGACTTT CCCAAGGTCG CCTTCCTCAT GGGCTCCTCG
CTCAAGCCGC AGGCGCCCAA CTTCAGCGTG TTCGACAACT ACATCCAGGA GCCGGCCTAC
CTGAGCGGCA TGGTGGCCGG CGGCATGACC AAGACCAACC GCATCGGCAT GGTCGGCGGC
TTTCCGATTC CTGAAGTGAA CCGGCTCATG AACGCCTTCA TGGCGGGCGC GAAGGAAACC
AACCCGAAGG TCGAATTCAG CGTGAGCTTC ATCAACAGCT GGTTCGATCC GCCCAAGGCC
AAGGAAGCGG CCTTCGCGAT GATCGACAAG GGCGCCGACG TGATGTACGC CGAGCGCTTC
GGCGTCTCGG ACGCGGCCAA GGAAAAAGGC AAGCTCGCCA TCGGCAACGT GATCGACACG
CAGGCGCAGT ACCCCGACAC GGTGGTGGCT TCGGCGCTGT GGAACTTCGA GCCCTCGGCC
GACCGCGCGA TCAAGCTCGT GAAGGAAGGC AAGTTCACCG CCGAGGACTA CGGCCCCTAC
TCGATGATGA AGCACAAGGG CTCCGAACTC GCGCCGCTGG GCACCTTCGA GAAGAAGGTG
CCGGCGGACA TCGTCGCCAA GGTCAAGGCC AAGCAGGCCG ACATTCTCTC GGGCAAGGTC
ACCATCAAGG TCGACGACTC GCAGCCCAAG TCGACCGCGA AGTGA
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| Protein sequence | MTARRQLIIR SAAMAAAALA AGTPGFALAQ AKLKVAAVYT VPFEQQWVGR IHKALKAAEA
RGEIEYKATE NVSNADYERV MREYATGGNQ LILGEVFGVE AAARKVAKDF PKVAFLMGSS
LKPQAPNFSV FDNYIQEPAY LSGMVAGGMT KTNRIGMVGG FPIPEVNRLM NAFMAGAKET
NPKVEFSVSF INSWFDPPKA KEAAFAMIDK GADVMYAERF GVSDAAKEKG KLAIGNVIDT
QAQYPDTVVA SALWNFEPSA DRAIKLVKEG KFTAEDYGPY SMMKHKGSEL APLGTFEKKV
PADIVAKVKA KQADILSGKV TIKVDDSQPK STAK
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