| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_2657 |
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| Symbol | |
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| ID | 7972419 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 2800863 |
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| End bp | 2801927 |
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| Gene Length | 1065 bp |
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| Protein Length | 354 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 644793245 |
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| Product | inner-membrane translocator |
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| Protein accession | YP_002944548 |
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| Protein GI | 239815638 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG4603] ABC-type uncharacterized transport system, permease component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.142958 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATGCGGC TCGAACGGCG CCACCAAAGC TCGCGCGCCG CGCTGGTGCT GGCACCCATC
GGCGCAGTGG CCTTCACCAT GGTGGTGAGC GCGCTGCTCG TGCTCTGGGC CGGTGCGCCG
GTCGGCCGCA CCTACGCATT GCTGCTGCAG GGCGGCTTCG GCTCGGTGTT CGCGTGGAGC
GAAACGCTGA CGCGCGCCAT TCCACTGATC CTCACCGGCT TGGCCGCGAC CGTCGCCTTC
AAGGCGCGGC TTTTCAACAT CGGCGCCGAG GGTCAGCTGT TCGCGGGTGC CCTCGCCGCC
GTGGCCGTGG GCGGCATGCA TGGCGGCACG GGTTTCGAGC TGCCGCCCTG GCTGCTGTTC
CCGCTGATGA TGCTGGCCGC CGCCGCGGCG GGCGCCCTGC TGCTGCTCGG CCCGGCGCTC
ATGAAGAACA GGCTCGGCGT CGACGAGGTG GTGACCACGC TGCTGATCAA CTTCATCGTG
CTGCTCGGCG TGTCGGCGCT GCTCGACGGG CCGATGAAGG ACCCGAGCGC CATGGGCTGG
CCGCAGAGCG TGTCGCTGCA GGCCGAGCTC GAACTCGGCA AGCTCGTTGC GCAGACCCGC
GTGCACACCG GACTCGTCTG GGCCGTGTCG CTCGCGGTGA TGGTGTGGGC GATCTTCAAG
TACACGGTGC TGGGCTTCGA CATCCGCGCG GTGGGCGCCA ATGCGCGCGC CGCCGCCTTC
GCCGGCGTGC CGGTCACGCG CACGGTGGTG ACGGTGGCGC TGCTCTCGGG TGCGCTGGCG
GGCCTTGCGG GTGCCATCGA AGTGGCGGGA CGCACCAGCT ATGTCACGCT CGACATGTCG
CCGGGCTACG GCTACACGGG CATCGTGATC GCGATGCTCG CGGGGCTGCA TCCGCTGGGC
GTGATCGCCG CGGGCGTGTT CGTGGCCGGC GTGCTGGTCG GCGCCGACAC CATGAGCCGC
GCCGTGGGCG TGCCGACCTA CATCGCCGAC GTGATCGTCG CGGCCTCGCT TGTCGCGGTG
CTGGTGGCGA CGCTGCTCAC GCAATACCGG GTGCGGATGA AATGA
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| Protein sequence | MMRLERRHQS SRAALVLAPI GAVAFTMVVS ALLVLWAGAP VGRTYALLLQ GGFGSVFAWS
ETLTRAIPLI LTGLAATVAF KARLFNIGAE GQLFAGALAA VAVGGMHGGT GFELPPWLLF
PLMMLAAAAA GALLLLGPAL MKNRLGVDEV VTTLLINFIV LLGVSALLDG PMKDPSAMGW
PQSVSLQAEL ELGKLVAQTR VHTGLVWAVS LAVMVWAIFK YTVLGFDIRA VGANARAAAF
AGVPVTRTVV TVALLSGALA GLAGAIEVAG RTSYVTLDMS PGYGYTGIVI AMLAGLHPLG
VIAAGVFVAG VLVGADTMSR AVGVPTYIAD VIVAASLVAV LVATLLTQYR VRMK
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