| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_2603 |
|---|
| Symbol | |
|---|
| ID | 7972365 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | + |
|---|
| Start bp | 2746742 |
|---|
| End bp | 2747485 |
|---|
| Gene Length | 744 bp |
|---|
| Protein Length | 247 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 644793191 |
|---|
| Product | undecaprenyl diphosphate synthase |
|---|
| Protein accession | YP_002944494 |
|---|
| Protein GI | 239815584 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG0020] Undecaprenyl pyrophosphate synthase |
|---|
| TIGRFAM ID | [TIGR00055] undecaprenyl diphosphate synthase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCCTCGT CTTCGCTGCA GATTCCCCAC CACATTGCCA TCGTCATGGA TGGCAACGGA
CGCTGGGCCA CGCGGCGATT CCTGCCTCGC GTGGCGGGGC ACAAGCAGGG CGTCGAGTCG
CTCAGGCGCT GCGTCAAGGC CTGTGTCGAC CGCGGGGTGG GCATTCTCAC GGTCTTCGCC
TTTTCGTCGG AGAACTGGAA CCGTCCGCCC GAAGAAGTTT CGGGCCTGAT GGAAATCATG
GTGGGCGCAC TCGCGCGCGA AGTGCCCAAG CTGAGCCGCG ACGGCGTGCA GCTGCATTTC
GTCGGCGAGC GCGCCGGGCT CTCCAAGAAA ATGGTGCAGG GCCTGGTCGA CGCCGAGAGC
GCCACCGCGC AGAACACCAA GCTGATCCTG AACGTCTGCT TCAACTACGG TGGCCGCTGG
GACATTGCCC GCGCCGCGGC CAGGCTGGCC GAGCAGGGCG AGGCGCTCAC CGAAGCGAAT
CTCGACCGCG CCATGGCTCT CGCGCACGTG CCCGATCCCG ACCTTCTCAT CCGCACCGGC
GGCGAGCAGC GCCTGTCGAA CTTCCTGCTG TGGCAAAGCG CCTACGCGGA GCTTTTCTTC
AGCGACAAGC TCTGGCCCGA GTTCGACCAG GCCGAACTGG ATGCGGGAAT CGCCGCCTTC
CAGGCGCGCG AGCGCCGCTT CGGCAAGACC TCCGCACAAC TCACGGCCGG CAGCGGCTCC
GCACCCGATC GCCAGTTGGC CTGA
|
|---|
| Protein sequence | MASSSLQIPH HIAIVMDGNG RWATRRFLPR VAGHKQGVES LRRCVKACVD RGVGILTVFA
FSSENWNRPP EEVSGLMEIM VGALAREVPK LSRDGVQLHF VGERAGLSKK MVQGLVDAES
ATAQNTKLIL NVCFNYGGRW DIARAAARLA EQGEALTEAN LDRAMALAHV PDPDLLIRTG
GEQRLSNFLL WQSAYAELFF SDKLWPEFDQ AELDAGIAAF QARERRFGKT SAQLTAGSGS
APDRQLA
|
|---|
| |