| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_2570 |
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| Symbol | |
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| ID | 7970047 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 2713246 |
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| End bp | 2714142 |
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| Gene Length | 897 bp |
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| Protein Length | 298 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 644793157 |
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| Product | short-chain dehydrogenase/reductase SDR |
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| Protein accession | YP_002944462 |
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| Protein GI | 239815552 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.596846 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCAGCTG AATGCAGGGA GCGACAACTG AAGGGCCGCG TGGCCGTGGT GACCGGAGCG
AGCCGCGGCG CCGGCCGCGG CATTGCGCTG GAACTGGGCG CCGCGGGCGC CACCGTGTAC
GTCACCGGGC GAAGCACGCG CGGGCAGCCG GCAAATACCT ATGGCCAGCT GCTCGCGCTC
TCGGAGCTCG AAGCCCTGCC GGGCAGCATC GACGAAACCG CCGACGAGGT CACACGGCTG
GGCGGACGCG GCATCGCGGT GCGCTGCGAC CACACGCAGG AAGACGAGGT GAAGCAGCTC
TTTGCGCAGG TGCAGCGCGA GCAAGGCCGC GTGGACCTGC TGGTCAACAA CGCCTGGGGC
GGCCACGAAA CTTTCACCGG CGTCTTCGAG GCGCCGTTCT GGGAGCATCC GCTTTCCAAC
TGGGACTCGA TGTTCGACCG CGGCGTGCGC AATCACCTGC TGGCCAGCCG CTTCGCCGCG
CCGCTGATGG TGGCGCAAAA GAGCGGGCTG ATCGTGACCA CCACCTTCTG GGACCGCGGC
AACTACCTGC GCGGGAACCT GTTCTACGAC CTCGCCAAAT CGGCCATGAC CCGGCTGGCC
TTCGGCATGG CGCAGGAGCT TCGTCCGGAC GGCGTCGCTT CGCTGGCCGT GTCGCCGGGC
TGGATGCGCA CCGAGTTCGT GCTGGCGGCC CACAAGACCG ACGAGGCGCA TTGGCGCGAG
CACCCGGCCT TGGCGCGGAC CGAGTCGCCG CGCTATCTCG GCCGCGCGGT GGCTGCGCTC
GCGGGCGATG CGCGGGTGCT CGAGAAAAGC GGCGGCGTGC ATCGCGTGGC CGACCTGGCG
CGCGAATACG GCTTCACCGA CATCGACGGC CGGCAGGTCG AGGCATTCGA GCTGTAG
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| Protein sequence | MPAECRERQL KGRVAVVTGA SRGAGRGIAL ELGAAGATVY VTGRSTRGQP ANTYGQLLAL
SELEALPGSI DETADEVTRL GGRGIAVRCD HTQEDEVKQL FAQVQREQGR VDLLVNNAWG
GHETFTGVFE APFWEHPLSN WDSMFDRGVR NHLLASRFAA PLMVAQKSGL IVTTTFWDRG
NYLRGNLFYD LAKSAMTRLA FGMAQELRPD GVASLAVSPG WMRTEFVLAA HKTDEAHWRE
HPALARTESP RYLGRAVAAL AGDARVLEKS GGVHRVADLA REYGFTDIDG RQVEAFEL
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