Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_2569 |
Symbol | |
ID | 7970046 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | + |
Start bp | 2712268 |
End bp | 2713197 |
Gene Length | 930 bp |
Protein Length | 309 aa |
Translation table | 11 |
GC content | 73% |
IMG OID | 644793156 |
Product | transcriptional regulator, AraC family |
Protein accession | YP_002944461 |
Protein GI | 239815551 |
COG category | [K] Transcription |
COG ID | [COG2207] AraC-type DNA-binding domain-containing proteins |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.639508 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCACGGCG GCACCCGCTG CCGCGCGCCA CGGTCCGCCA ACGCGATGCC GACACTGCCC AAGAACGAAC GCTTGTACCT GCGCCTCGAC GACGACCCCT TGCACGGGCC GGAGGCCGGC ATGCCCGCGG ACACGCTGCG CGCCTTTTCG GTCGCCGAGC CGCTGCGGAT GCACGTTGCG CACATTCTTC TCTACAGGGA AACGCTGCCC GAGGGCCGCG AGGTGCTGGA GCGCGTGCTG CCCGATGGGG CGGTGCGGCT GGTCTTCAAC CTGGGCGATG CGCCCTCGGC GGGCGAGAGC GCCGGACATG CGGTCGAGGC CATCGGCGCG TCGGCGGCGC CGGCCCTCGT GCGCCTCTGC CGGAAGATGG AAGGGCTGTC GGTGACCCTG CGCCCCGGCG CGGCCGCGGC GCTGCTCGGA AGGCCGGCCA GCGAGATCGC AGGCACTGCC GTGCACCTGG ACGAACTGTG GCGCGGCCGT GGTGCCGAAC TGCTGGAGCG CATCGCGCTG CAGCCGGACG ACGCGTCGCG CGTGTCGGTG CTGTGCGCGG CCCTGCAGCG CCGGCTGGCC GATGGCGACG GCGCCGTCCA CGTGGCGGCC ATGCGCGCGG CGCAACTCAT CGCCACGTCG GGCGGACGGC GTCCGCTGCG CGAGGTGGCG CAGGCCGTCG GGCTTGGCGA GCGGCGGCTG CAACAGGTCT TTCGGCAGCA GGTGGGCCTG TCGCCGCGGG CCTGGAGCCG GCTCGCGCGG CTGCATGCCT GCGTGCGCGC CTTGCGCCTG CAGCGCGAGC CCGCCTGGGC CAGCCTTGCG CTGGATGGCG GCTTCTATGA CCAATCGCAC CTCATCAACG AGTTCCAGGC GCTTTGCGGC CTCACGCCGA CGGAGTTTCT GGGTCGCGCG ATTTCGGGTT CTTCCAAGAC GGCGGATTGA
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Protein sequence | MHGGTRCRAP RSANAMPTLP KNERLYLRLD DDPLHGPEAG MPADTLRAFS VAEPLRMHVA HILLYRETLP EGREVLERVL PDGAVRLVFN LGDAPSAGES AGHAVEAIGA SAAPALVRLC RKMEGLSVTL RPGAAAALLG RPASEIAGTA VHLDELWRGR GAELLERIAL QPDDASRVSV LCAALQRRLA DGDGAVHVAA MRAAQLIATS GGRRPLREVA QAVGLGERRL QQVFRQQVGL SPRAWSRLAR LHACVRALRL QREPAWASLA LDGGFYDQSH LINEFQALCG LTPTEFLGRA ISGSSKTAD
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