Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_2564 |
Symbol | |
ID | 7970041 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | + |
Start bp | 2706861 |
End bp | 2708348 |
Gene Length | 1488 bp |
Protein Length | 495 aa |
Translation table | 11 |
GC content | 74% |
IMG OID | 644793151 |
Product | RND efflux system, outer membrane lipoprotein, NodT family |
Protein accession | YP_002944456 |
Protein GI | 239815546 |
COG category | [M] Cell wall/membrane/envelope biogenesis [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1538] Outer membrane protein |
TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.248386 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAATTCG CATTTCAACC CTGGGCCCGC ACTGCCTTGC TGCCGCTGGT CGCAGCCCTG GCGCTGGCCG GCTGCGCGAG CGTGCCCTCG GGCGTGCCCG AGATCCAGAC CACTGCCGAG TTCAAGGAGC AGGGCGCCGC CCCGCCCGCG GGCTGGACGC GTGCCGTGCC CTCCGAAGCG CAGGCGCGCG GCGCCTGGTG GCTGGCGTTC AACGACCCGG TGCTCAATGC GCTGGTCGAG AAGGCCGACG TCAGCAACAA CAACATCCAG GCCGCGGCGG CGCGGCTGGC CGAGGCCCGC GCGCTGGCGC GCAGCGCCAA TGCCGACCGC ATGCCGCAGA TCGGCCTGGG CGCGGGCGCC AACCGCGGCG CCGGCCTCGA CAAGGCCACG GCCAGCACCC GGCCGGCCAC CATGACCAAC ATCGGCGCCA CCTTCTCGTA CGAGGTCGAC CTGTTCGGCC GCCTCTCGGG CGCGAGCAAT GCGGCCAAGC TCGATGCGCA GAGCCGCGAG GCCCTGCTGC AGAGCACGCG CCTCGCGGTG CAGGCCGAAG TGGCCCAGAC CTACCTGCAG CTGCGTGCGC TCGACGCCGA GCGCGCGCTG GTGCGCGAGC AGGTCGAGGC CTACCGCGAC ACGCTGCGCC TCTCGCAGCG CCGCCAGCAG GCCGGCGACA TCGCCGAGCT CGACGTGGCG CGCGTGCAGA CCGAGGTCTC GTCCACCGAG TCGGACGCGC TCGCGCTCGA CCGGCAGCGC GCCCAGGTCG AGCATGCGCT CGCGGTGCTG GTGGGCGACT CGGCCTCGAG CTTCGGCCTG CGCACCGACG ACTGGGCCAC CGCGCTGCCG TCCGTGCCGC CCGGCGTGCC GGCCACGGTG CTCACGCGCC GCCCCGACGT CTCGGCCGCG CAGAACGCGG TGCTCGCGGC GCAGGCCCGC GTGGGCGTGG CGCAGGCGGC GTGGTTCCCG GACATCTCGC TGACCGGCGC GGCCGGCTAT GCATCGCCCG AGATCGGCGA CCTGTTCAAG TGGTCGGCCC GCTCGTGGGG CGTGGGTGCG CTGCTCTCGC TGCCGATCTT CGACGGCGGC CGCCGCGAAG CCGGCGTGCA GGGTGCCAAT GCCCAGCTCG ACGGCGCGCT CGCGAACTAC CGCAACCAGG TGCTGGTGGC GTTCCAGGAG GTCGAAGACC AGCTGTCCGC GATCCGCATC CTGCAGGAGC AGTCGGCGGT GCAGGCGCAG GCCGTCACCT CGGCGCAGCG CGCGACCAGC CTGTCGGACA CGCGCTACCG CAACGGCTAC ATCAGCCAGC TCGACCTGCT CGACGCCCGC CGCAGCGAAT TGCGCAACCG GCGCCAGGCG CTGCAGGTGA AGTCGGCGCA GTACCAGGCG GCCGTGGGGC TGATCCGCGC CATCGGCGGC GGCTGGGAGG TGCCGGCGGC CACCGCAAAG GCGCCGCCCC AGGACGGGGC AGCCGCGGTA CAGACCGCGG CGCGCTGA
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Protein sequence | MKFAFQPWAR TALLPLVAAL ALAGCASVPS GVPEIQTTAE FKEQGAAPPA GWTRAVPSEA QARGAWWLAF NDPVLNALVE KADVSNNNIQ AAAARLAEAR ALARSANADR MPQIGLGAGA NRGAGLDKAT ASTRPATMTN IGATFSYEVD LFGRLSGASN AAKLDAQSRE ALLQSTRLAV QAEVAQTYLQ LRALDAERAL VREQVEAYRD TLRLSQRRQQ AGDIAELDVA RVQTEVSSTE SDALALDRQR AQVEHALAVL VGDSASSFGL RTDDWATALP SVPPGVPATV LTRRPDVSAA QNAVLAAQAR VGVAQAAWFP DISLTGAAGY ASPEIGDLFK WSARSWGVGA LLSLPIFDGG RREAGVQGAN AQLDGALANY RNQVLVAFQE VEDQLSAIRI LQEQSAVQAQ AVTSAQRATS LSDTRYRNGY ISQLDLLDAR RSELRNRRQA LQVKSAQYQA AVGLIRAIGG GWEVPAATAK APPQDGAAAV QTAAR
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